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Detailed information on CNT30235032


BLAST search results

BLAST vs Swiss-Prot:
sp|P04781|CB23_PETSP, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30542598Brassica oleraceaBrassica napus99.495.7499.88832forward
CNT30480879Brassica oleraceaArabidopsis halleri33.9360.392.61284forward

Expression of CNT30235032

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGCLMGPLAWLRSSSLSHGRFQGLLMLLGKA*

>peptide 2 (56 aa)
MVSKILQRSLTSDNSLNKESKHREHSQSSVLDLLHLQLREGLWVSSQTQRLREDAA*

>peptide 3 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT30235032
TTTTGTAGAAATAACTTTTGCAATTGAATGATAACAAAAAAACATAAATCCATTTCCATTTAGTTCTACGACACAGTTGATAAGACAAAGAGTTATTGGA
TTAATGGTAAATCATACAAATACTTGCAAATTTTACATCTAAACAACATCTCTTTCTCCTCTTACACTCACAAGAAGCAAATACTGAAGCAAATTACAGA
TAAAAACATCGCTCACTTTCCGGGAACGAAGTTGGTAGCAAAGGCCCATGCATTGTTGTTAACTGGATCAGCCAAATGGTCAGCAAGATTCTCCAAAGGT
CCCTTACCAGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAATCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCGCGAAGGCCT
CTGGGTCAGTAGCCAAACCCAACGGCTCCGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCCACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTCGC
GAACGTCTCGGGATCGGCTGAGAGACCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCCGGTAAGGTAGCTCGGTGGCTCGCCGGAGAATGGGCCC
AAGTACTTGACTCTCTCGGATCCGTACCATGGGCTGCCTGATGGGCCCTTTGGCTTGGCTACGGTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTT
CTGATGCTGCTGGGGAAAGCTTGACGGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATTGTTGAGGCGGCCATTGCGGTTGAGTGCTGAGCGAAATA
AAACGTTTATTGGTTGTTGTTTATGAGCCAAGAGATG