Detailed information on CNT30313780


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZ87|CB1B_ARATH, E-value = 1e-146

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616124Camelina sativaSesamum indicum58.1657.7681.94659forward
CNT30234343Camelina sativaBrassica oleracea66.9976.5989.72759forward
CNT30480879Camelina sativaArabidopsis halleri24.157.9693.41273forward

Expression of CNT30313780

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MSYLINDKSYEVFANLHLKVSNHRPQTQTFSFSSCLSLEFKRLKKRKLQTDKNLAHFPGTKLVAKAHALLLTGSAKWSARFSIGPLPVTMA*

>peptide 2 (97 aa)
MVSKVLYRSLTSDNGLNEESKHGEHSQSSVLKLLHLQLSECLWVGSQTQWVEAASGVKQVLGLSPRDHLQRLCSLQQLPSRSLEWPRSPKCSEHGPS*

>peptide 3 (35 aa)
MENIANLPFLSSFTFNSANASGSVAKPNGSKLPPG*

>peptide 4 (29 aa)
MAHLLWITSSSRFLANVSGSAESPAVSHP*

>peptide 5 (61 aa)
MGCLMDPLAWQLSSSLSHGRFRGLLMPPGKDSQPFRRRQGRREPLLRRPLKCFCFFLFLGD*

Sequence

>CNT30313780
TTCAGTTTTTGAGTTACCATATTACGAGACGAGTATGAGAGAAAAATGAGTTATTTGATTAATGATAAATCATATGAAGTCTTTGCAAATTTACATCTGA
AAGTCTCAAACCATCGACCACAAACACAAACCTTCTCTTTCTCCTCCTGTCTCTCACTCGAATTCAAAAGACTGAAAAAAAGAAAATTACAAACTGATAA
AAACTTGGCTCACTTTCCGGGAACAAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGACTGGATCGGCCAAATGGTCAGCAAGGTTCTCTATCGGTCCC
TTACCAGTGACAATGGCTTGAACGAAGAATCCAAACATGGAGAACATAGCCAATCTTCCGTTCTTAAGCTCCTTCACCTTCAACTCAGCGAATGCCTCTG
GGTCGGTAGCCAAACCCAATGGGTCGAAGCTGCCTCCGGGGTAAAGCAAGTCCTCGGCCTCTCCCCAAGGGACCATCTCCAGCGACTCTGTAGCCTTCAA
CAGCTCCCATCAAGATCACTTGAGTGGCCCAGATCGCCAAAATGCTCTGAGCATGGACCAAGCTAGGGTTTCCCAAGTAATCGAGTCCTCCATCGCTGAA
GATTTGTGAACCGGCCTTGAACCAAACCGCCTCTCCGAACTTGACTCCGTTCCTGGCCAAAAGCTCAGGGAAGACGCAGCCAAGGGCTCCGAGCATGGCC
CACCTGCTGTGGATAACTTCTAGCTCACGGTTCCTTGCGAATGTCTCGGGGTCAGCAGAGAGTCCAGCGGTGTCCCATCCGTAGTCTCCGGGGAACTCTC
CGGTAAGGTAGCTCGGTGATTCGCCGGAGAATGGGCCCAAGTACTTGACTCGGTCGGATCCGTACCATGGGCTGCCTGATGGACCCTTTGGCTTGGCAAC
TGTCTTCCTCATTGTCACACGGCCGCTTCCGAGGACTTCTGATGCCGCCGGGGAAAGATTCACAGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATT
GTTGAGGCGGCCATTGAAATGTTTTTGTTTTTTTTTATTTTTGGGTGACTAACTTGTGAGTGAGAGTGATTGAAAATGTTTATGTAGGTTTGGATTATAT
AGGGATATTGCGAGTAACGTTTGTTATCTCTGA