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Detailed information on CNT30542598


BLAST search results

BLAST vs Swiss-Prot:
sp|P04781|CB23_PETSP, E-value = 2e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235032Brassica napusBrassica oleracea95.7499.499.88832forward
CNT30480879Brassica napusArabidopsis halleri32.6860.392.61284forward

Expression of CNT30542598

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGCLMGPLAWLRSSSLSHGRFQGLLMLLGKA*

>peptide 2 (56 aa)
MVSKILQRSLTSDNSLNKESKHREHSQSSVLDLLHLQLREGLWVSSQTQRLREDAA*

>peptide 3 (29 aa)
MAHLQWITSSSRFLANVSGSAERPAVSHP*

Sequence

>CNT30542598
TTTGATTAATTCAATAGCATTAGTTAGCATTTGCTCAATTTTGTAGAAATAACTTTTGCAATTGAATGATAACAAAAAAACATAAATCCATTTCCATTTA
GTTCTACGACACAGTTGATAAGACAAAGAGTTATTGGATTAATGGTAAATCATACAAATACTTGCAAATTTTACATCTAAACAACATCTCTTTCTCCTCT
TACACTCACAAGAAGCAAATACTGAAGCAAATTACAGATAAAACATCGCTCACTTTCCGGGAACGAAGTTGGTAGCAAAGGCCCATGCATTGTTGTTAAC
TGGATCAGCCAAATGGTCAGCAAGATTCTCCAAAGGTCCCTTACCAGTGACAATAGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAATCTTCCG
TTCTTGATCTCCTTCACCTTCAACTCCGCGAAGGCCTCTGGGTCAGTAGCCAAACCCAACGGCTCCGGGAAGACGCAGCCTAGGGCTCCGAGCATGGCCC
ACCTGCAGTGGATAACTTCTAGCTCACGGTTCCTCGCGAACGTCTCGGGATCGGCTGAGAGACCTGCGGTGTCCCATCCGTAGTCTCCTGGGAACTCTCC
GGTAAGGTAGCTCGGTGGCTCGCCGGAGAATGGGCCCAAGTACTTGACTCTCTCGGATCCGTACCATGGGCTGCCTGATGGGCCCTTTGGCTTGGCTACG
GTCTTCCTCATTGTCACACGGCCGCTTCCAAGGACTTCTGATGCTGCTGGGGAAAGCTTGACGGCCTTTCCGGCGAAGGCAGGGGAGGAGAGAGCCATTG
TTGAGGCGGCCATTGCGGTTGAGTGCTGAGCGAAATAAAACGTTTATTGGTTGTTGTTTATGAGCCAAG