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Detailed information on CNT30468260


BLAST search results

BLAST vs Swiss-Prot:
sp|P27787|FER1_MAIZE, E-value = 1e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695475Saccharum spontaneumOryza sativa27.128.792.11190forward
CNT30676003Saccharum spontaneumSetaria viridis59.3458.2688.46416forward
CNT30523578Saccharum spontaneumSetaria italica59.3436.4388.94416forward
CNT30306166Saccharum spontaneumTriticum aestivum43.9463.1187.99308forward
CNT30399991Saccharum spontaneumTriticum turgidum43.7946.4486.97307forward
CNT30442771Saccharum spontaneumAegilops tauschii43.7952.2187.3307forward
CNT30670303Saccharum spontaneumTriticum dicoccoides42.515086.58298forward
CNT30140637Saccharum spontaneumLolium perenne43.7945.7587.3307forward
CNT30687640Saccharum spontaneumTriticum urartu43.7932.4986.97307forward
CNT30351013Saccharum spontaneumEragrostis tef44.7950.492.04314forward
CNT30596694Saccharum spontaneumOryza meridionalis20.2616.8892.25142forward
CNT30370928Saccharum spontaneumOryza glumipatula33.5229.2391.91235forward
CNT30577438Saccharum spontaneumOryza barthii20.6823.0593.79145forward
CNT30584932Saccharum spontaneumEchinochloa crusgalli43.9458.4495.13308forward
CNT30117470Saccharum spontaneumOryza nivara32.8126.2691.74230forward
CNT30595007Saccharum spontaneumEragrostis curvula59.6361.0287.08418forward
CNT30558096Saccharum spontaneumPanicum hallii45.0839.0693.67316forward

Expression of CNT30468260

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNNIIAIAKQQAVSTRVIKKKLITNRDKHD*

Sequence

>CNT30468260
AAATATAAGCACACAGACACACGTTTATAGGGCGTCTCTCGATCCACCCACGGATGAAAACTCAACGCTTACATGAATAATATAATTGCAATTGCAAAGC
AACAAGCAGTAAGTACGCGCGTAATCAAGAAGAAGCTAATAACGAACAGAGATAAGCATGATTAGGCGCCGCCGGTGAGCTCCTCCTCCAAGTGCGTCGC
GATGACGACGTCGGAGGTGGGGTAGGCGGCGCAGGTGAGCACCCAGCCGGCGGCGATCTGGTCGTCATCGAGGAAGCTCTGGTCGGACTGGTCGACGCTG
CCGGCGACGACCTTGCCGGCGCAGGAGGAGCAGGACCCCGCGCGGCAGGAGTAGGGCAGGTCGATCCCTTCCTCCTCGGCCTGGTCCAGGATGTACACGT
CGTCGGGCACCTGCAGCTCCACCTCCCCGTCCGGCGTGATGAGCTTCACGTTGTAGGTGGCCTGCGCGCGCAGCCTGGCGCCGCGGGCCGGCTTGGCCGC
GGGCAGCGCCACGACGGTGGCCACCGGGGCGGCGGCGAGGCCGAGGGAGAAGGCCGGCGCGCGGAGGCTGCTGCTCAGGGCGGTGGCCATTGGACTGTAG
TGTGTGATTGCTATAGCTGCGGTAGCTGCTGCAGCAGAAGCTGGGTAGCGACAATGGAGTGTTTTGTTTGCTCTGCTACAGCTAGCTAGCGGACAATGGA
G