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Detailed information on CNT30117470


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0J8M2|FER1_ORYSJ, E-value = 3e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676003Oryza nivaraSetaria viridis26.2632.2189.13230forward
CNT30523619Oryza nivaraSetaria italica28.235.4489.07247forward
CNT30193074Oryza nivaraSecale cereale22.0330.0291.19193forward
CNT30307054Oryza nivaraTriticum aestivum23.6326.3791.3207forward
CNT30227182Oryza nivaraHordeum vulgare23.7422.0390.87208forward
CNT30398821Oryza nivaraTriticum turgidum23.7423.1491.35208forward
CNT30442771Oryza nivaraAegilops tauschii23.7435.3791.83208forward
CNT30256898Oryza nivaraAvena sativa23.9724.9790.48210forward
CNT30670303Oryza nivaraTriticum dicoccoides23.6334.7391.79207forward
CNT30468260Oryza nivaraSaccharum spontaneum26.2632.8191.74230forward
CNT30140637Oryza nivaraLolium perenne23.2930.486.76204forward
CNT3010346Oryza nivaraZea mays26.2637.3490.43230forward
CNT30683971Oryza nivaraTriticum urartu23.7431.4291.83208forward
CNT30343859Oryza nivaraEragrostis tef26.2634.5390.87230forward
CNT30366876Oryza nivaraSorghum bicolor24.5439.5289.77215forward
CNT30370873Oryza nivaraOryza glumipatula72.0383.9195.72631forward
CNT30584932Oryza nivaraEchinochloa crusgalli26.2643.6493.04230forward
CNT30498059Oryza nivaraDigitaria exilis23.8628.2190.43209forward
CNT30595007Oryza nivaraEragrostis curvula26.2633.5887.39230forward
CNT30558096Oryza nivaraPanicum hallii26.2628.4390230forward
CNT30551540Oryza nivaraOryza brachyantha27.7429.9691.77243forward

Expression of CNT30117470

Peptides detected in this lncRNA

>peptide 1 (84 aa)
AILMGLILTSIGIYTSIHTRTVNSVRNTWSRHKSRTRIYSLLINCSFKYMEYVFDSSIYDTVMHAYMTPKCDMDMIKQVQQNVH*

>peptide 2 (39 aa)
MRTQPAATWSSSRKLWSDWSISPETTLPAQEEQEPARQE*

>peptide 3 (61 aa)
MYTSSGTCSSTSPSGVISFTLYVACIRSLSPSLLLAGSTDTRAGTSATGPGCSVPSPPWLL*

Sequence

>CNT30117470
GCGATTTTAATGGGATTAATTTTGACCTCGATCGGCATATATACATCCATTCATACACGAACAGTTAATTCAGTACGAAACACATGGAGTAGACACAAGA
GTAGAACTAGGATATATAGCTTATTAATTAACTGTTCTTTCAAATACATGGAGTACGTATTTGACAGTAGTATATATGACACAGTAATGCATGCATATAT
GACACCAAAATGTGATATGGATATGATTAAGCAGGTGCAGCAAAACGTACATTAATTAAACAACAACAATTAACCCTCGGGCACGCCTGTGTTTTGTTAT
CTCGCTCAACGTATACGTACGTAATACTTTGCTTGCATAGCATAGGGACGACGACATTATATTCTTAATTGATAAACTCAAGAACGCATGGAGATGGATT
GAGAGATTTATAAATATGGAGCTTGCTTGATTGATTAGATGAGGACCCAGCCGGCGGCAACCTGGTCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCGAT
CTCGCCGGAGACCACCTTGCCGGCGCAGGAGGAGCAGGAGCCCGCGCGGCAGGAGTAAGGCAGGTCGATCCCTTCCTCCTCCGCCTGGTCCAGGATGTAC
ACGTCGTCCGGCACCTGCAGCTCCACCTCGCCGTCCGGTGTGATCAGCTTCACGTTGTACGTCGCCTGCATCCGCAGCCTGTCTCCCAGCTTGTTGCTCG
CCGGCAGCACCGACACGCGCGCCGGGACATCGGCAACCGGACCTGGCTGCTCAGTGCCGTCGCCGCCATGGCTGCTATAGCTAATTAAGCTAGCTAGCTG
CTGCTGCTAGGTAAGGTAGACGAGGAGGAGAGGAGTGAGCTAGCAAGAATGTGAGCGTGAGGTTGAAGGAGGCTGA