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Detailed information on CNT30596694


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0J8M2|FER1_ORYSJ, E-value = 9e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523690Oryza meridionalisSetaria italica31.0335.0886.59261forward
CNT30193074Oryza meridionalisSecale cereale16.8822.0890.14142forward
CNT30306166Oryza meridionalisTriticum aestivum16.7728.8989.36141forward
CNT30226235Oryza meridionalisHordeum vulgare9.6336.1692.5981forward
CNT30399164Oryza meridionalisTriticum turgidum16.7720.4189.36141forward
CNT30442558Oryza meridionalisAegilops tauschii29.4947.1585.89248forward
CNT30248270Oryza meridionalisAvena sativa16.8820.287.32142forward
CNT30668396Oryza meridionalisTriticum dicoccoides29.4947.9784.68248forward
CNT30468260Oryza meridionalisSaccharum spontaneum16.8820.2692.25142forward
CNT30140637Oryza meridionalisLolium perenne16.4120.5786.23138forward
CNT3010346Oryza meridionalisZea mays16.8823.0591.55142forward
CNT30683971Oryza meridionalisTriticum urartu16.8821.4590.14142forward
CNT30343859Oryza meridionalisEragrostis tef16.8821.3290.14142forward
CNT30366929Oryza meridionalisSorghum bicolor16.8829.0492.25142forward
CNT30102959Oryza meridionalisOryza rufipogon81.9393.3691.44689forward
CNT30584932Oryza meridionalisEchinochloa crusgalli16.8826.9492.96142forward
CNT30497787Oryza meridionalisDigitaria exilis16.7720.5289.36141forward
CNT30551540Oryza meridionalisOryza brachyantha22.8323.6790.1192forward

Expression of CNT30596694

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MYTSSGTCSSTSPSGVISFTLYVACIRSLSPSLLLAGSTDTRAGAGAAATRRDMGNRTWLLSAVAAMAIAN*

>peptide 2 (29 aa)
MEYVFDSSMHAYIYIYIYMTPKCDMNMIN*

>peptide 3 (38 aa)
MSRYKSRTRIYSLLIVLSNTWSTYLTVVCMHIYIYIYI*

Sequence

>CNT30596694
AATTAATTCAGTACGAAACACATGAGTAGATACAAGAGTAGAACTAGGATATATAGCTTATTAATTGTTCTTTCAAATACATGGAGTACGTATTTGACAG
TAGTATGCATGCATATATATATATATATATATATATGACACCAAAATGTGATATGAATATGATTAATTAAGCAGCTGCAGCAAAACGTACATTAATTAAA
CAACAATAATTAACCCTCGGGCACGCCTGTGTTTTGTTATCTCGCTCAACATATACGTACGTAGTACTTTGCTTGCATAGGGACGACGACATTATATTCT
TAATTGATAAACTCAAGAACGCATGGAGATCGATCGATCGATCGAGAGATTTATAAATATGGAGCTTGCTTGATTGATTGATTAGATGAGGTCGTCCTCC
TTGTGGGTCTCGATGACGACGTCGGACTTGGGGTAGGCGTGGCAGGTGAGGACCCAGCCGGCGGCCACCTGGTCGTCGTCGAGGAAGCTCTGGTCGGACT
GGAGGAGCAGGAGCCCGCGCGGCAGGAGTAAGGCAGGTCGATCCCTTCCTCCTCCGCCTGGTCCAGGATGTACACGTCGTCCGGCACCTGCAGCTCCACC
TCGCCATCGGGGGTGATCAGCTTCACGTTGTACGTCGCCTGCATCCGCAGCCTCTCCCCGAGCTTGCTGCTCGCCGGCAGCACCGACACGCGCGCCGGCG
CCGGAGCCGCCGCCACCCGCAGGGACATGGGCAACCGGACCTGGCTGCTCAGTGCCGTCGCCGCCATGGCTATAGCTAATTAAGCTAGCTAGCTGCTGCT
GCTAGGTAAGGTAGAGGAGGAGGAGGAGAGGTCGTCGCAAA