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Detailed information on CNT30577438


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0J8M2|FER1_ORYSJ, E-value = 5e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695349Oryza barthiiOryza sativa74.5671.82100469forward
CNT30675966Oryza barthiiSetaria viridis30.5240.0891.15192forward
CNT30523554Oryza barthiiSetaria italica32.5951.5190.24205forward
CNT30193074Oryza barthiiSecale cereale23.0522.5589.66145forward
CNT30307305Oryza barthiiTriticum aestivum23.0535.0288.97145forward
CNT30227182Oryza barthiiHordeum vulgare23.0515.3689.66145forward
CNT30398821Oryza barthiiTriticum turgidum23.0516.1388.97145forward
CNT30443073Oryza barthiiAegilops tauschii30.5228.0391.67192forward
CNT30248458Oryza barthiiAvena sativa31.835.4688.5200forward
CNT30668240Oryza barthiiTriticum dicoccoides23.0524.3790.34145forward
CNT30468260Oryza barthiiSaccharum spontaneum23.0520.6893.79145forward
CNT30140637Oryza barthiiLolium perenne23.0521.6185.52145forward
CNT3010346Oryza barthiiZea mays23.0523.5492.41145forward
CNT30683395Oryza barthiiTriticum urartu30.5230.3891.67192forward
CNT30343861Oryza barthiiEragrostis tef30.5233.6889.58192forward
CNT30366812Oryza barthiiSorghum bicolor31.6452.6592.46199forward
CNT30596759Oryza barthiiOryza meridionalis94.2877.0189.71593forward
CNT30370840Oryza barthiiOryza glumipatula64.3956.25100405forward
CNT30102906Oryza barthiiOryza rufipogon48.4939.25100305forward
CNT30579416Oryza barthiiEchinochloa crusgalli30.0522.3990.48189forward
CNT30497787Oryza barthiiDigitaria exilis30.3727.888.48191forward
CNT30117488Oryza barthiiOryza nivara10074.3599.68629forward
CNT30595007Oryza barthiiEragrostis curvula23.0521.1786.9145forward
CNT30551540Oryza barthiiOryza brachyantha23.211891.78146forward

Expression of CNT30577438

Peptides detected in this lncRNA

>peptide 1 (78 aa)
ILTSIGIYTSIHTRTVNSVRNTWSRHKSRTRIYSLLINCSFKYMEYVFDSSIYDTVMHAYMTPKCDMDMIKQVQQNVH*

Sequence

>CNT30577438
ATTTTGACCTCGATCGGCATATATACATCCATTCATACACGAACAGTTAATTCAGTACGAAACACATGGAGTAGACACAAGAGTAGAACTAGGATATATA
GCTTATTAATTAACTGTTCTTTCAAATACATGGAGTACGTATTTGACAGTAGTATATATGACACAGTAATGCATGCATATATGACACCAAAATGTGATAT
GGATATGATTAAGCAGGTGCAGCAAAACGTACATTAATTAAACAACAACAATTAACCCTCGGGCACGCCTGTGTTTTGTTATCTCGCTCAACATATACGT
ACGTAATACTTTGCTTGCATAGCATAGGGACGACGACATTATATTCTTAATTGATAAACTCAAGAACGCATGGAGATGGATCGAGAGATTTATAAATATG
GAGCTTGCTTGATTGATTAGATGAGGTCGTCCTCCTTGTGGGTCTCGATGACGACGTCGGACTTGGGGTAGGCGTGGCAGGAGGAGCAGGAGCCCGCGCG
GCAGGAGTAAGGCAGGTCGATCCCTTCCTCCTCCGCCTGGTCCAGGATGTACACGTCGTCCGGCACCTGCAGCTCCACCTCGCCGTCCGGTGTGATCAGC
TTCACGTTGTACGTCGCCTGCATCCGCAG