« Back to Setaria italica search


Detailed information on CNT30523578


BLAST search results

BLAST vs Swiss-Prot:
sp|P27787|FER1_MAIZE, E-value = 9e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30398821Setaria italicaTriticum turgidum22.6828.8191.12259forward
CNT30442771Setaria italicaAegilops tauschii22.6844.0591.51259forward
CNT30670303Setaria italicaTriticum dicoccoides22.6843.4691.12259forward
CNT30468260Setaria italicaSaccharum spontaneum25.2241.0892.01288forward
CNT30140637Setaria italicaLolium perenne25.2242.9288.19288forward
CNT3010346Setaria italicaZea mays25.2246.7593.4288forward
CNT30687640Setaria italicaTriticum urartu22.6827.4191.12259forward
CNT30351013Setaria italicaEragrostis tef25.2246.2394.79288forward
CNT30370928Setaria italicaOryza glumipatula20.2328.7390.48231forward
CNT30497939Setaria italicaDigitaria exilis25.2236.7893.75288forward
CNT30594952Setaria italicaEragrostis curvula25.2254.7594.44288forward
CNT30558096Setaria italicaPanicum hallii25.2235.695.83288forward
CNT30551540Setaria italicaOryza brachyantha16.7323.5594.24191forward

Expression of CNT30523578

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHDTRKGIVRRRQTRSLARARQILDIASA*

Sequence

>CNT30523578
GTAGCAAATCTCACGTGGAGTATTAATTAATTTCTTGGACAAAATGCTAAGCGAGATAAACCATCACACATTAGCTCAACACTTGCAAACCAAATAGCTA
CTGTATTGCATGCAAGAAAAACGAAATGCATCATAGTACATAGAGTAGGACGTCTCTCCATGGTTGAAGTCTACAACGCTTATTGAGTAATTGCACTAGC
ACGCACGATGTATAACCAAGAAATCAACCGAGATAAATAAGCATTAGGAGCACGTAGGCATATACATTAGACGATGAGTTCCTCCTCCTTGTGGGTCTCG
ATGACGACGTCGGAGGTGGGGTAGGCGGCGCAGGTGAGCACCCACCCGGCGGCGACCTGAGGAAAAACGTTATTAATTACTTGAGCGAAGCCTATCATGC
ATCCGCAGTAAAAATGAATGATACAGAGACCAGCAATAAGCAGAGTAACAAACGATGGAGAAGCTGCTGATGCCGATGCTTAATTGCAAGGTCTCATGGT
GACACTGACATGCATGATACAAGAAAGGGAATTGTCCGGCGTCGTCAAACTCGATCTCTTGCAAGAGCAAGACAGATACTAGATATAGCAAGCGCGTAGC
AGGTAGTGATCGAGCTTCTTAGATGAGCTCCTCCTCCTTGTGCGTCTCGATGACGACGTCGGAGGTGGGGTAGGCGTGGCAGGTGAGCACCCACCCGGCG
GCGACCTGGCCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCGACGGAGCCGGAGACGACCTTGCCGGCGCAGGAGGAGCAGGAGCCGGCGCGGCACGAGT
AGGGCAGGTCGATCCCATCCTCCTCGGCCTGGTCGAGGATGTAGACGTCGTCGGGCACCTGGAGCTCCACCTCGCCGTCGGGGGTGATGAGCTTGACGTT
GTAGGTGGCCTGCGCGCGCAGCCTGGCGCCGCGGGCGACCTTGGCCGGCAGCGCGACGGTGGCCGGCGCCGGCGCCGGGGCGGCGCGGACGGAGAAGGCC
GGCGCGCGGAGGCTGCTGAGGGCGGTGGCCATTATTGTGCTTTGTGGTTGCTAGGTAGCTGCAGCAGCTGAAGCAATGGAAGAATCGGCCACACACACCT
AGGGATTAGGGAAGGAATGAAGGAGCAATGGAGGGGCGGGTG