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Detailed information on CNT30440750


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SCM3|RS24_ARATH, E-value = 1e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708364Aegilops tauschiiGlycine max23.8626.1484.35115forward
CNT30157936Aegilops tauschiiPistacia vera31.547.2283.55152forward
CNT30235898Aegilops tauschiiBrassica oleracea29.0523.9781.43140forward
CNT3075029Aegilops tauschiiBrassica juncea20.9526.5883.17101forward
CNT30261364Aegilops tauschiiBrassica rapa20.9517.5383.17101forward
CNT30227885Aegilops tauschiiAnanas comosus40.4657.6988.72195forward
CNT30362959Aegilops tauschiiSorghum bicolor12.0324.1796.5558forward

Expression of CNT30440750

Peptides detected in this lncRNA

>peptide 1 (80 aa)
TIESLARMMAPRMAVATSLAHLTPRPTWPLLSPTTTKALKRVRCPARVCFWTGVIFITSSLSPGQSVSTIWCSLTGSEWR*

Sequence

>CNT30440750
CACGATTGAGAGCTTGGCGAGGATGATGGCGCCGCGGATGGCCGTGGCCACCTCCTTGGCGCACTTGACGCCGAGGCCGACGTGGCCGTTGCTGTCGCCG
ACGACGACGAAGGCCTTGAAGCGGGTGCGCTGTCCGGCGCGGGTCTGCTTCTGGACCGGGGTGATCTTCATCACCTCGTCCTTGAGCCCCGGGCAGAGCG
TCTCCACGATCTGGTGCTCCTTGACGGGGAGCGAGTGGAGGTAGATCTCCTCCATCTTGGTGAAGCGGCCCTCCTTGACGAGGCGGCCGAGCTTGAAGCC
GCGCCCGAAGCCGCCGCGGTCGCCGCCGCGCTCGCCGACACCACGCTCGCCGCCGCGGTCCGCCATGGCTGGGTGGGGGTGGGGGGTTGGGGGCAGTGAG
CTTGGATGGGGGAGATGAGGGTTTGGAGCTGGAGGCTGTGGCGGCGGCTAAGGGGTGGGAGAGCTGGGCGAGATGGGGTGAT