Detailed information on CNT30362959


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671891Sorghum bicolorSetaria viridis22.0821.290.5753forward
CNT30522235Sorghum bicolorSetaria italica70.8311.3591.18170forward
CNT30440750Sorghum bicolorAegilops tauschii24.1712.0396.5558forward
CNT3075029Sorghum bicolorBrassica juncea24.1715.2689.6658forward
CNT30261364Sorghum bicolorBrassica rapa24.1710.0789.6658forward
CNT30450215Sorghum bicolorSaccharum spontaneum71.6712.8996.51172forward
CNT30227885Sorghum bicolorAnanas comosus50.8336.0984.43122forward
CNT30153003Sorghum bicolorPrunus persica21.6724.388.4652forward

Expression of CNT30362959

Peptides detected in this lncRNA

>peptide 1 (78 aa)
LTKLPSVLVEPRDELLHDLVLLDGERVQVDLLDLVDPVLLHEAPQLGDRHPLLLLLLAAAAPATAAPATVAAPAATEPA

Sequence

>CNT30362959
CCTTGACGAAGTTGCCGAGTGTCTTGGTGGAGCCACGGGACGAGCTGCTCCACGATCTGGTGCTCCTTGACGGGGAGCGAGTGCAGGTAGATCTCCTCGA
TCTTGTGGATCCGGTTCTCCTTCACGAGGCGCCCCAGCTTGGTGACAGGCACCCACTTCTCCTCCTCCTGCTGGCGGCCGCCGCGCCGGCCACCGCGGCG
CCCGCCACGGTCGCCGCGCCCGCCGCGACCGAACCCGCGG