Detailed information on CNT30235898


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SCM3|RS24_ARATH, E-value = 4e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708364Brassica oleraceaGlycine max35.2746.8281.07206forward
CNT30157936Brassica oleraceaPistacia vera43.6612.1180.78255forward
CNT30440750Brassica oleraceaAegilops tauschii23.9729.0581.43140forward
CNT3075029Brassica oleraceaBrassica juncea25.3438.9593.92148forward
CNT30261364Brassica oleraceaBrassica rapa33.5634.0395.41196forward
CNT30153003Brassica oleraceaPrunus persica15.2441.5983.1589forward

Expression of CNT30235898

Peptides detected in this lncRNA

>peptide 1 (91 aa)
HRNRTTLPSNLTRNRMRLPNLVPPIPSPHGNHRQLRQYNPTPDRRRHLLGALHTQPHVPVRVSDNDKGLEPRPLTGPGLFLNRHDLHHLVF*

>peptide 2 (73 aa)
TVTEPHFPVTLQGTVCGFPILFPQYPLLTGITDSFANIIPPLIAVATSLEHFTPNPTCPFVSPTTTKALNLVL*

Sequence

>CNT30235898
CACCGTAACAGAACCACACTTCCCAGTAACCTTACAAGGAACCGTATGCGGCTTCCCAATCTTGTTCCCCCAATACCCTCTCCTCACGGGAATCACAGAC
AGCTTCGCCAATATAATCCCACCCCTGATCGCCGTCGCCACCTCCTTGGAGCACTTCACACCCAACCCCACGTGCCCGTTCGTGTCTCCGACAACGACAA
AGGCCTTGAACCTCGTCCTCTGACCGGCCCTGGTCTGTTTCTGAACCGGCATGATCTTCATCACCTCGTCTTTTAAAGTTGGACCGACGAGGAGGGAGTG
GAGGTAGATCTGCTCGAGCTTCTGGATCTTTCCGGCTTGGACGAGACGGCCGAGCTTGGTCACTGGGGTCCACTTCTCCTCCTCTGTGGGACGTCCTCCG
CGTCTGGCGCCTCGGCCTCTCGGACCTCCGCGGCCGCCTCGGTCGCCGCGGCCTCCTCCGAATCCCCGTCCGAAACCGCCGCGGTCTCCTCCTCGCTCGG
CGCCTCGTTCTCCACCCCGTTCAGCCATTGTCGATGTAGAGAGTTGCGAGAAAATGGAAATGGCTCTGCGGCGATGTGTGTGTG