CANTATAdb - search

Detailed information on CNT30157936

BLAST search results

BLAST vs Swiss-Prot:
sp|Q93VB8|RS22_ARATH, E-value = 2e-111

BLAST vs NONCODE:
NONPOPT001715, E-value = 1e-62

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691889	Pistacia vera	Oryza sativa	13.06	95.16	78.55	275	forward
CNT30372448	Pistacia vera	Arabidopsis thaliana	5.65	26.92	81.51	119	forward
CNT30708364	Pistacia vera	Glycine max	14.63	70	81.82	308	forward
CNT30235898	Pistacia vera	Brassica oleracea	12.11	43.66	80.78	255	forward
CNT30440750	Pistacia vera	Aegilops tauschii	7.22	31.54	83.55	152	forward
CNT3075029	Pistacia vera	Brassica juncea	8.5	47.11	82.12	179	forward
CNT30261364	Pistacia vera	Brassica rapa	7.08	25.87	83.22	149	forward
CNT30600607	Pistacia vera	Fraxinus excelsior	3.47	25.35	87.67	73	forward
CNT30227885	Pistacia vera	Ananas comosus	5.94	36.98	86.4	125	forward
CNT30434240	Pistacia vera	Papaver somniferum	19.57	52.96	80.58	412	forward

Expression of CNT30157936

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSSFPVGFPKRSVYSWNGDFTKRVSLQKSGVRNPYVFNKHSKVACGFEVSKT*

>peptide 2 (34 aa)
MKSSLYININLKNIYKCKQLPLHRQKIKKSAQLS*

Sequence

>CNT30157936
ATTCAACCAACCATAATTTGATTCAAATGTCAAAATGTTAAAACAGACAATTGTCCCAAAAATACCAACATACTAGTCCTGCAGAAATTAAAAAGAAAAA
AAGAAAAACATTTGTAACGAACAACGCTATACTATAAGGCCGAGCAAAATTCAAGAAACCTAAAATAGCTTAAGCATCAATTCCATGATCCTCTGCAATG
AGTAGCTTCCCAGTTGGCTTTCCCAAGAGATCTGTGTACTCTTGGAATGGAGATTTCACAAAGCGAGTCTCCCTCCAAAAGTCAGGAGTGAGGAATCCAT
ACGTCTTCAACAAACACTCGAAAGTTGCCTGCGGATTTGAAGTAAGTAAAACATAAGCCACCAACAACACTAAAACTAAATTTATTGAAGTAATATTCAC
TTAATCGTAAGTTGCAAGTATAAATTCTCACAAAAATTGTTATAGCAAAACCACAAGACATCAGTTCCAATGGAAATTAGATGGAATAACCATAACAAAA
TTTAAAAAATACAATGCATACGCAGTAAAATGAACTATACAAACAGAAGTTCAATGCTCGAGGATATAGCATCGATAAAAAAAATATATATATAATGGCA
ACTCGTCAAACAGAGCCCCTAGCAGAAAAAAACATCATTTTCAACTAAAAATAAAACCAGAACCTCATGAAATAACAATCATACATAGAAAAGGTCAAAA
CAGTAGGTTGATCAATTCAAAACATTTAACTACATTTGCCACACACACAATGAAGAGCTCTCTATATATCAACATAAATCTTAAGAATATATATAAATGC
AAACAATTACCATTGCATCGCCAAAAAATAAAAAAAAGTGCACAACTTAGTTGATAAAAGTAACATCCATTGGGAAAACATAAAGAAACACAGAAATGGC
AAGAAAACTCAACATAAAATACAACTTTTAGCCCATACAATTGAATGTGAAACAAAACTTAAACCTTTAAAGAACGCATTAGAACTTACGGAAACACAAT
TAACTTTTATTTGAAGCAGTTTAGCCAAATTATAAACTAAAAACCTTCATAAAATATCACCAGGACACCAATCAACAATCTGTACTTTATCGATAAGATT
TACAGTATAAAAAAAATTCACAACAAATCGACAACGTTATTCAGTGATTTCAACATATCTTTAAACCTCCATCACGACTTAAAACCCTAGTTAAAATGCC
ACATTTTTTTAGCCACTAAACCTATAAATAATTAATCAAATCAAAGCCATACCAGAAATAAATAAAACTTATAAACGAAAAAAGTTTTTAAAAAAAAAAA
AGGTAAAAATCTAAACCTTCACAAAGTTTCCAAGAGTTTTGGTAGACCCACGAGAGGATGTGAAAACATCCTCAATCCCAGCGAACTGCAGAACCTTCTT
TGGGACCCTAGCAGCCACGATTCCAGCTCCACGTGGTGCCGGCACCATTCTCACGGTAACACTACCACACTTCCCCGTAACCTTGCAGGGCACGGTGTGT
GGCTTACCGATCTTGTTACCCCAGTATCCTCTCCTCACTGGAATAACCGACAGTTTGGCCAGTATAATCGCTCCGCGAATTGCCGTGGCCACTTCCTTCG
AGCACTTGACGCCGAGTCCGACGTGGCCGTTACCGTCACCGACAACAACGAAGGCCTTGAACCTGGTTCTCTGACCGGCACGTGTCTGCTTCTGAACTGG
CATGATTTTCATGACCTCATCCTTCAACGAGGGGCCGACCAGCTGGTCGATAATTTGATACTCCTTGATTGGCAAAGAGTGGAGATAGATCTGCTCGAGG
CTTCTGATCTTGTTCTCTTTAACTAAACGACCGAGTTTAGTGACTGGAACCCATTTCTCTTCCTCCTCTCTACGGCCAGCGCGGCGACGGCCACGAGGAC
CGCCACGGTCGCCACGGCCTCGGCCAAATCCACGCCCGAAGGATCCACGCTCGCCGCCTCGTTCTGCCATGCTTGCTTTTGGTTAGAATGGGCTTTGGGT
AGGGGTTTTTTGCGAGAGCAAAATGCTGAAGCGAGAGGCAGAGTGAGAGAGTTAAGAAAGTAAAATGGGGATATATATATGTGCAAGGGTGGGGAAGTTA
GGGTT