Detailed information on CNT30261364


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372448Brassica rapaArabidopsis thaliana18.2323.7682.86105forward
CNT30157936Brassica rapaPistacia vera25.877.0883.22149forward
CNT30235898Brassica rapaBrassica oleracea34.0333.5695.41196forward
CNT30440750Brassica rapaAegilops tauschii17.5320.9583.17101forward
CNT3075029Brassica rapaBrassica juncea65.9710098.68380forward
CNT30362959Brassica rapaSorghum bicolor10.0724.1789.6658forward
CNT30153003Brassica rapaPrunus persica20.6655.6184.87119forward
CNT30434240Brassica rapaPapaver somniferum21.8816.280.95126forward
CNT3026267Brassica rapaPopulus trichocarpa24.8338.5481.82143forward

Expression of CNT30261364

Peptides detected in this lncRNA

>peptide 1 (34 aa)
EIQVKKILEGITIDYKKKTRAKIALFGGDDENIR*

>peptide 2 (38 aa)
MKGSSKNKTRGTLFVCLFRSTSHPNQRARSCLRRRQRP*

Sequence

>CNT30261364
GAGAAATTCAAGTAAAAAAAATACTAGAGGGCATAACCATCGATTATAAAAAAAAAACTAGAGCAAAAATAGCTTTGTTTGGGGGAGATGATGAAAACAT
AAGATAGCAGCAATCCAGCAAACAACATATACTAAAGGTTCGAACAAAATAAAACTCATGAAAGGATCATCCAAAAACAAAACAAGGGGGACATTGTTTG
TTTGTTTATTTAGGAGCACTTCACACCCAAACCAACGTGCCCGTTCGTGTCTCCGACGACGACAAAGGCCTTGAACCTCGTCCTCTGACCGGCCCTGGTC
TGTTTCTGAACCGGCATGATCTTCATCACCTCGTCTTTCAAGGTGGGGCCGACGAGGAGGTCGATGATCTGGTACTCCTTGACGGGGAGGGAGTGGAGGT
AGATCTGCTCGAGCTTCTGGATCTTTCCGGCTTGCACGAGACGGCCGAGCTTGGTCACTGGGGTCCACTTCTCCTCCTCTGTCGGACGTCCTCCGCGTCT
GCCGCCTCGGCCTCTCGGACCTCCCCGGCCTCCTCTGTCGCCGCGACCTCCTCCGAATCCTCGTCCGAAACCGCCG