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Detailed information on CNT30440717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224984Aegilops tauschiiHordeum vulgare33.9456.694150forward
CNT30247757Aegilops tauschiiAvena sativa66.7420.1182.37295forward
CNT305261Aegilops tauschiiZea mays33.2653.2690.48147forward
CNT30721720Aegilops tauschiiTriticum spelta34.1628.0798.68151forward
CNT30344859Aegilops tauschiiEragrostis tef66.5244.4182.65294forward
CNT30363924Aegilops tauschiiSorghum bicolor24.4346.3583.33108forward

Expression of CNT30440717

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MATGASVPFPCRNSRVLVAYTKLPSRLLMSTRNGIRLSC*

>peptide 2 (87 aa)
GVAVVRVQELVHRVGHAELPVGGDDEGLHHRVRVEPVADQLVPAVVVHGGRPGSAASSARWRPAPACRSLAGTAGSWSRTRSYRRGC*

Sequence

>CNT30440717
ATGGTGTCGCGGTAGTGCGGGTGCAGGAGCTTGTACACCGGGTGGGTCACGCTGAGCTGCCTGTTGGTGGCGATGACGAAGGGCTCCATCACCGCGTGCG
TGTTGAGCCAGTGGCTGATCAGCTGGTGCCAGCCGTAGTCGTTCACGGAGGTCGCCCTGGATCAGCGGCGAGCTCAGCTCGATGGCGACCGGCGCCAGCG
TGCCGTTCCCTTGCAGGAACAGCAGGGTCCTGGTCGCGTACACGAAGCTACCGTCGAGGTTGTTGATGTCGACCAGGAACGGCATCAGGTTGTCGTGCTG
ATCCACGATGTAGAGCCTGTTGTCGGCGAGCGCCTGCTCCACGGTGAGGCCCTCGAGGCTCCTACCGATGTGCGCCTCCGTGATGGTGCTGGTGTGGTCG
CCGTACTTGCTCGGATCCAGTGTACTTTTGGGAGGGAACTCC