« Back to Avena sativa search


Detailed information on CNT30247757


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7G794|LOX3_ORYSJ, E-value = 1e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440717Avena sativaAegilops tauschii20.1166.7482.37295forward

Expression of CNT30247757

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MVVVVKDVELVVVDSLLNGEALXXXXNEGLHHGVRVEPVADQLVPTVVVHADIGLGELPYPGLDAGGGWRVHGALRGREVSLD*

>peptide 2 (56 aa)
MVVVVKDVELVVVDSLLNGEALEALSDVSLGDGAGVVAVLAGIKSTLGWELLHQFS*

Sequence

>CNT30247757
GGTTGTCTCGATGATCCCGCCGGCATTGACGAGCAACTCCCGTGCCCGTGAGTTGATGTTCATCGTGTCACGGTAGTGTGGGTGAAGGAGCTTGTGCACC
GGGTGGGTCACACTCAGCTGCCGATTTGTGGCGATAATGAAGGGCTCCATCACGGCGTGCGTGTGGAGCCAGTGGCTGATCAGTTGGTGCCAACCATAGT
CGTTCACGCAGACATAGGCCTTGGCGAGCTGCCATATCCAGTTCTTGTAGGTGACGGATGACATCTCCATGGCGTACTTGCGCTGAAATACGGTTGTCTC
GATGATCCCGCCGGCATTGACGAGCAACTCCCGTGCCCGTGAGTTGATGTTCATCGTGTCACGGTAGTGTGGGTGAAGGAGCTTGTGCACCGGGTGGGTC
ACACTCAGCTGCCGATTTGTGGCGATAATGAAGGGCTCCATCACGGCGTGCGTGTGGAGCCAGTGGCTGATCAGTTGGTGCCAACCGTAGTCGTTCACGC
AGACATAGGCCTTGGCGAGCTGCCATATCCAGGCCTCGACGCCTGTGGAGTATGGCGTGTACACGGTGCTCTTCGGGGTCGTGAGGCCTCCCTGGATCAG
AGGTGTGCTCAGCTCGATGGCGATTGGCGCCAGCGTGCCATCACCTCTCAGGAAGAGCAGAGTCCTCGTCGCGTAGAGGAAGGTGTCATCAAGGTTGTTG
AGCTTGATGAGGTATGGCATCATATGGTCGTGGTGGTCAAGGATGTAGAGCTTGTTGTTGTCGACAGCCTGCTGAACGGTGAGGCCCTCNNNNNNNNNNA
TAATGAAGGGCTCCATCACGGCGTGCGTGTGGAGCCAGTGGCTGATCAGTTGGTGCCAACCGTAGTCGTTCACGCAGACATAGGCCTTGGCGAGCTGCCA
TATCCAGGCCTCGACGCCGGTGGAGGATGGCGTGTACACGGTGCTCTTCGGGGTCGTGAGGTCTCCCTGGATTAGAGGTGTGCTCAGCTCGATGGCGATT
GGCGCCAGCGTGCCATCACCTCTCAGGAAGAGCAGAGTCCTCGTCGCGTAGAGGAAGGTGTCATCAAGGTTGTTGAGCTTGATGAGGTATGGCATCATAT
GGTCGTGGTGGTCAAGGATGTAGAGCTTGTTGTTGTCGACAGCCTGCTGAACGGTGAGGCCCTCGAGGCTCTTTCCGATGTGAGCCTCGGTGATGGTGCT
GGTGTGGTCGCCGTACTTGCTGGGATCAAGAGTACTCTTGGGTGGGAACTCCTGCACCAATTCAGTTAATTAATTACCCCATTAGTTCTCGGCGAGTAGA
AAACTTATTACGAAAATGCAACTCCATATAGAAAAATTTCACTAATCTCCATCGCAAACTACAATTGGTTGACCGATGTGTTGACTCACGGTGACACGTG
TGATCATCATCGGGTTCACTCCTGCAAGAATCTCCCTCGCAAACTCATCATCAGTCATCCACGCTTT