Detailed information on CNT30344859


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7G794|LOX3_ORYSJ, E-value = 3e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30591859Eragrostis tefMusa acuminata16.6223.5581.82110forward
CNT30440717Eragrostis tefAegilops tauschii44.4166.5282.65294forward
CNT30247547Eragrostis tefAvena sativa80.8258.3479.63535forward
CNT30454858Eragrostis tefSaccharum spontaneum22.2156.9887.76147forward
CNT30136407Eragrostis tefLolium perenne42.7594.9783.04283forward
CNT304788Eragrostis tefZea mays35.253.8184.98233forward
CNT30721720Eragrostis tefTriticum spelta32.7840.3386.18217forward
CNT30361402Eragrostis tefSorghum bicolor29.6171.2789.8196forward

Expression of CNT30344859

Peptides detected in this lncRNA

>peptide 1 (55 aa)
LTRSAGRACSLKFQLLYTTEDMASAYLPGKTVISKMPPPLMSVCRASALMFIVSR*

>peptide 2 (96 aa)
DEVRGEGLLVEVPAFVHDGGHGQRVLAREDGHLEDAAAVDERLPRQRVDVHRVAVVRVEELVHRVRHAQLPVRRDHERLHDGWLMSWCQPESLTAT*

Sequence

>CNT30344859
TTGACGAGGTCCGCGGGGAGGGCCTGCTCGTTGAAGTTCCAGCTTTTGTACACGACGGAGGACATGGCCAGCGCGTACTTGCCCGGGAAGACGGTCATCT
CGAAGATGCCGCCGCCGTTGATGAGCGTCTGCCGCGCCAGCGCGTTGATGTTCATCGTGTCGCGGTAGTGCGGGTGGAGGAGCTTGTGCACCGGGTGCGC
CACGCTCAGCTGCCGGTTCGTCGCGATCACGAACGGCTCCATGACGGCTGGCTAATGAGCTGGTGCCAGCCGGAGTCGTTGACGGCGACGTAGGCCTTGG
CGAGCTGCCACACCCAGGCCTCCACGCCGCTGGACGCCGGCGTGTACACCTTGCTCTTTGCCACGGTCAGGTCGCCCTGGATTTGCGGCTCGCTGAGCTC
GATGGCGAGCGGCGTCAGCCTGCCGTCGCCGCGCAGGAAGAAGAGCGTCCTGGTGGCGTAGATGAAGTTGCCCTTGAGGTTGTTGACGTCGATGAGGAAC
GGCATGAACCGGTCGTGGTGGTCCAGGATGTAGAGCCGGTTGCCGTCCAGCGCCTGCTGCACGGTGAGGCCCTCGAGGTTCTTCTCGATGTGCGCCGCCG
TGATGGTGCTGGTCTGGTCGCCGTACTTGCTGGGATCAAGCGTGCTCTTCGGAGGGAACTCC