Detailed information on CNT30193415


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002426, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516799Secale cerealeJuglans regia29.5410.7283.73166forward
CNT30171099Secale cerealeTrifolium pratense26.1625.380.27147reverse complement
CNT30371226Secale cerealeOryza glumipatula39.6878.2592.83223reverse complement
CNT3038524Secale cerealeCucumis melo29.7217.6792.81167forward
CNT30104396Secale cerealeOryza rufipogon100.1852.4297.87563reverse complement
CNT30578338Secale cerealeOryza barthii39.6861.2691.93223reverse complement

Expression of CNT30193415

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MNAGLGHLKWREPHAGRPARTVFRGIRPAGAHPTRGTEKLIEYKTYLQALPYFDRLE

>peptide 2 (38 aa)
MLGWATSNGVSRMRGDPHVRFSGGSGRPAPTRLEGLRN*

Sequence

>CNT30193415
GTCCAAGTCAACCACTGAATTTCCTGTAATTCATAGCGCCTAACAGAACGTAGCAGCAAGGGACAACCCACCCATACAGACAGCCTGCGGGGAGGATGGC
ACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTGGGCCTGCGCCGGGGGAGCATAGGGAGGAAAGGGAGCCCGGACGGTGGAA
GAGCCAGGGGAAGCCGGGTCATTTGACGGAAATGGAAGGTCCGAGCGGCTCATTCATTCTTGAAAAAAGAGGGGGGAGCGAGCCAATGTATCAATGAATA
GATACAGTCAACGGTATTAAGACAGCGCTGCCTACACGCGATTTAGCTTCCGAGGTCGAGCAGTCTCAATTTCACTACAGGATTTGCGAATGAATGCTGG
GCTGGGCCACCTCAAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTCAGGGGGATCCGGCCGGCCGGCGCCCACCCGACTAGAGGGACT
GAGAAATTAATCGAGTACAAAACTTATCTTCAAGCTTTACCTTATTTTGATCGTTTAGAGGG