Detailed information on CNT30371226


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516799Oryza glumipatulaJuglans regia29.475.4388.184reverse complement
CNT30164425Oryza glumipatulaPistacia vera79.312.1884.51226reverse complement
CNT30193415Oryza glumipatulaSecale cereale78.2539.6892.83223reverse complement
CNT30221243Oryza glumipatulaHordeum vulgare10013.2392.63285forward
CNT3038524Oryza glumipatulaCucumis melo103.8631.3283.78296reverse complement
CNT30104396Oryza glumipatulaOryza rufipogon10026.5494.74285forward
CNT30578338Oryza glumipatulaOryza barthii10078.399.3285forward

Expression of CNT30371226

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLRYVRCYELQEIKWLTWTAGGLHVPLCRDVRCRW*

>peptide 2 (60 aa)
MTWLPLALPLSGHPFLPMLPRRRPTTLRACGVFARRSLPVVPSSRLVVCMGGLSLNATLC*

>peptide 3 (55 aa)
NDLASAGSSTVWAPFPPYAPPAQAHHASRLRRFRQTVFASSAILPFGCLYGWVIP*

Sequence

>CNT30371226
AATGACCTGGCTTCCGCTGGCTCTTCCACTGTCTGGGCACCCTTTCCTCCCTATGCTCCCCCGGCGCAGGCCCACCACGCTTCGCGCCTGCGGCGTTTTC
GCCAGACGGTCTTTGCCAGTAGTGCCATCCTCCCGTTTGGTTGTCTGTATGGGTGGGTTATCCCTTAATGCTACGTTATGTTAGGTGCTATGAATTACAG
GAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTCCACTGTGCCGAGATGTGAGGTGCAGGTGGTGATGATCACCCC