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Detailed information on CNT30377520


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 5e-143

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30312763Arabidopsis thalianaCamelina sativa75.1550.7490.12759forward
CNT3061767Arabidopsis thalianaArabidopsis lyrata71.8844.4691.32726forward
CNT30480747Arabidopsis thalianaArabidopsis halleri68.8159.9192.95695forward
CNT30642981Arabidopsis thalianaCannabis sativa67.7260.9683.92684forward
CNT3027808Arabidopsis thalianaTheobroma cacao67.5258.7983.87682forward
CNT30330510Arabidopsis thalianaDioscorea rotundata63.4768.2683.31641forward

Expression of CNT30377520

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MKGRLLLNVVVSKSSSVFKLLTGKDKSLLIRRDSFLVLDLCFDVVNSVRALNLQSNGLASQSLDKDLHTTS*

>peptide 2 (53 aa)
MRHEPTTYHQITKSLEASTTKTKNQVKSRLLLDVVICKVRPSSSCLPAKISLC*

>peptide 3 (31 aa)
MVSELSTSRVIVLPVRVLTKICIPPLRRSTK*

Sequence

>CNT30377520
TTGGATTATTATTGAGAGTTGAAATACAAAGGCCCGTTACAAGCCCAAACGAAGGTACATAAAAGAAAAGCAGAAAATGAAAACGAAATCGATAGGGATA
AGTTTTTCCAACTGACGGAAACACAAACTACACCAGGTGAAATAGATCACCTCCCAAGTGCATGAGACACGAACCAACCACTTATCATCAGATCACAAAA
AGCTTAGAAGCTTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTGCAAGGTGCGTCCATCTTCGAGCTGCTTAC
CGGCAAAGATAAGCCTCTGCTGATCCGGAGGAATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTGTCTGAACTCTCAACCTCAAGGGT
GATTGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCATACCACCTCTGAGACGAAGCACCAAATGAAGGGTCGACTCCTTTTGAATGTTGTAGTCAGCA
AGAGTTCTTCCGTCTTCAAGCTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCTTTGACGTTGTCAA
TAGTGTCAGAGCTCTCAACCTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCATACCACCTCTTAAACGGAGAACCAAATGAAGGGT
TGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAATATTAATCTTTGCTGATCCGGAGGAATGCCTTCCTTG
TCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATAGTCTTGCCAGTGAGTGTTTTCACGAAGATTTGCATCTGAA
ATAAAACAATAGAACAAGTAGAAACCAATCAGCGAACATATACCAAATCAAAAGCCAGAGAGTCGCGAGAGATTTGCAGAGATCGCTTTAGGCTTTGGGA
GAGATTGAAG