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Detailed information on CNT30642981


BLAST search results

BLAST vs Swiss-Prot:
sp|Q58G87|UBQ3_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 6e-156

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30532384Cannabis sativaEucalyptus grandis81.1161.4483.52910forward
CNT30516063Cannabis sativaJuglans regia77.1887.6581.76866forward
CNT30701241Cannabis sativaQuercus lobata77.1884.4183.37866forward
CNT30377520Cannabis sativaArabidopsis thaliana60.9667.7283.92684forward
CNT30279009Cannabis sativaChenopodium quinoa81.2859.6982.89912forward
CNT30727227Cannabis sativaCorchorus capsularis60.8759.4484.48683forward
CNT30379426Cannabis sativaManihot esculenta80.6678.1583.31905forward
CNT30629220Cannabis sativaVigna unguiculata77.1880.1982.68866forward
CNT30201346Cannabis sativaPisum sativum60.7866.0984.31682forward
CNT30709517Cannabis sativaGlycine max75.4991.1783.47847forward
CNT30156153Cannabis sativaPistacia vera80.5778.4782.74904forward
CNT30635990Cannabis sativaCapsicum annuum81.1143.985.27910forward
CNT30238962Cannabis sativaBrassica oleracea81.1147.0882.09910forward
CNT30511508Cannabis sativaSolanum lycopersicum77.7266.6782.68872forward
CNT30172216Cannabis sativaTrifolium pratense81.1153.482.53910forward
CNT30145458Cannabis sativaMedicago truncatula79.5954.6284.77893forward
CNT30312399Cannabis sativaCamelina sativa81.1169.6882.75910forward
CNT3061767Cannabis sativaArabidopsis lyrata81.1155.7383.08910forward
CNT30622816Cannabis sativaDaucus carota81.1148.483.19910forward
CNT30480747Cannabis sativaArabidopsis halleri81.1178.4583.41910forward
CNT30153909Cannabis sativaPrunus persica54.4674.2485.43611forward
CNT30425514Cannabis sativaPapaver somniferum77.1862.4482.56866forward
CNT3032754Cannabis sativaTheobroma cacao74.7863.9582.48839forward
CNT3026527Cannabis sativaPopulus trichocarpa77.1888.6483.26866forward
CNT30326890Cannabis sativaAsparagus officinalis79.0671.8883.54887forward
CNT30120072Cannabis sativaCitrus clementina67.5665.1883.91758forward
CNT30330420Cannabis sativaDioscorea rotundata81.1153.7882.86910forward
CNT30111771Cannabis sativaFicus carica79.5971.6785.33893forward
CNT3050995Cannabis sativaCucumis sativus72.3772.9683.62812forward

Expression of CNT30642981

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MKGGLFLNVVVSKCPSILELLTGKDKSLLIRWDTFLVLDLCFDIVNSVGALNLQGYCLPSKGLNKNLHTTTKTENQVEGRLLLNVVISKSPTIF*

>peptide 2 (52 aa)
MSLCWSGGIPSLSCILAFTLSMVSELSTSKVMVFPVRVLTKICIPPRRRRTK*

Sequence

>CNT30642981
TCACTCTGAATATGAAAATACCACCACAAGGCACAAACCATAGCACGAAATACCAAATTTTATTCAGACCTCCCTAGGCCAAACCATAAACCGCCATATA
TAAAAGTTTTAAAAACCATAAACCGTGTACTAAAACATAAAAGCAGTTCCATAGTAGTAAACCATAAACAGAAAATTAAAATGCATTCATAATAGCGAAA
CGGATTTAAATGCCACCACGAAGACGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCCAAAGTCCTTCCATCTTCCAATTGTTTCC
CAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGAATTTTTGCCTTTACATTGTCGATTGTATCCGAGCTTTCAACCTCGAGGGT
GATGGTCTTTCCGGTAAGGGTCTTCACAAAAATTTGCATTCCACCACGGAGACGAAGCACAAGATGAAGGGTGGACTCTTTCTGAATGTTGTAGTCAGCA
AGTGTCCTTCCATCCTCGAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATACCTTCCTTGTCTTGGATCTTTGCTTTGACATTGTCAA
TAGTGTCGGAGCTCTCAACCTCCAAGGTTATTGTCTTCCCAGTAAGGGTCTTAACAAAAATCTGCATACCACCACGAAGACGGAGAACCAAGTGGAGGGT
AGACTCCTTTTGAATGTTGTAATCAGCAAGAGTCCTACCATCTTCTAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTG
TCTTGTATTTTAGCTTTTACGTTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTTATGGTCTTTCCAGTGAGGGTCTTGACAAAGATTTGCATACCTC
CACGAAGACGGAGAACCAAATGAAGGGTTGACTCCTTCTGTATGTTGTAGTCAGCTAGAGTCCGGCCATCCTCAAGTTGCTTTCCAGCGAAAATCAACCT
CTGCTGGTCTGGGGGAATGCCCTCCTTATCTTGAATTTTAGCTTTAACATTGTCAATGGTGTCCGAGCTCTCGACCTCTAAAGTAATAGTCTTTCCTGTG
AGGGTTTTAACGAAGATTTGCA