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Detailed information on CNT3061767


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30528288Arabidopsis lyrataEucalyptus grandis56.0368.2884.15915forward
CNT30546269Arabidopsis lyrataIpomoea triloba51.0792.8782.61834forward
CNT30701438Arabidopsis lyrataQuercus lobata55.9162.5882.04913forward
CNT30377520Arabidopsis lyrataArabidopsis thaliana44.4671.8891.32726forward
CNT30279009Arabidopsis lyrataChenopodium quinoa54.1957.9283.05885forward
CNT30379426Arabidopsis lyrataManihot esculenta55.4278.1582.43905forward
CNT30156153Arabidopsis lyrataPistacia vera53.9576.4884.45881forward
CNT30637458Arabidopsis lyrataCapsicum annuum55.7920.7582.66911forward
CNT3097291Arabidopsis lyrataSolanum tuberosum53.9557.2183.54881forward
CNT30511543Arabidopsis lyrataSolanum lycopersicum54.0779.7782.33883forward
CNT30171101Arabidopsis lyrataTrifolium pratense56.0355.0282.4915forward
CNT30145472Arabidopsis lyrataMedicago truncatula55.7948.982.66911forward
CNT30311003Arabidopsis lyrataCamelina sativa56.9578.9588.92930forward
CNT30217449Arabidopsis lyrataKalanchoe fedtschenkoi54.0758.5284.82883forward
CNT3066849Arabidopsis lyrataLeersia perrieri55.7968.1982911forward
CNT30623044Arabidopsis lyrataDaucus carota55.9746.3583.37914forward
CNT30480747Arabidopsis lyrataArabidopsis halleri61.386.2995.11001forward
CNT30359535Arabidopsis lyrataLactuca sativa56.0954.2381.99916forward
CNT30423866Arabidopsis lyrataPapaver somniferum55.7971.2382.66911forward
CNT30706355Arabidopsis lyrataPrunus avium54.5657.9784.4891forward
CNT30642981Arabidopsis lyrataCannabis sativa55.7381.1183.08910forward
CNT3032754Arabidopsis lyrataTheobroma cacao54.3267.6182.75887forward
CNT3026527Arabidopsis lyrataPopulus trichocarpa53.0388.6482.91866forward
CNT30120580Arabidopsis lyrataCitrus clementina54.1381.0381.9884forward
CNT30330510Arabidopsis lyrataDioscorea rotundata55.4296.3882.32905forward
CNT30334102Arabidopsis lyrataCynara cardunculus55.8541.3881.36912forward
CNT3050995Arabidopsis lyrataCucumis sativus55.0580.7782.76899forward
CNT30114931Arabidopsis lyrataEutrema salsugineum53.9579.4482.52881forward

Expression of CNT3061767

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MESRLFLDVVVSKSSSVLKLLTGKDKPLLVRRNSFLVLDLGFDIINGV*

>peptide 2 (32 aa)
METEPNQVKNITSSPPKCMTQRTATFDQITKA*

>peptide 3 (31 aa)
MVSELSTSRVIVLPVRVFTKICIPPRRRRTR*

>peptide 4 (30 aa)
MVLPVRVFTKICIPPLRRSTKWRVDSFWML*

>peptide 5 (30 aa)
MVLPVRVLTKICIPPLKRRTKWRVDSFWIL*

Sequence

>CNT3061767
CTCACATCAAACTCGTCATATGTAAAGAGCAAAAATCAATGTTTAAAATGCACTTGGATTATTATTGAAAGTTGAAAGACAAAGGCCCGTTACGAGCCCA
ACCAAAAGTTCATAAGAACATACAAGAAAAGCAGACGATGAAACTTAAAACAACTAAAGGGACAAGTTTTTCCCGCAGATGGAAACAGAACCAAACCAGG
TGAAGAACATCACATCATCACCTCCCAAGTGCATGACACAGAGAACCGCCACTTTTGATCAGATCACAAAAGCTTAGAAGCTTCCACCACGAAGACGGAG
AACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGCTAAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGCCTCTGTTGGTCTGGT
GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCCACCTCCAAAGTTATGGTCTTGCCGGTTAGGGTCTTCACAA
AGATCTGCATACCACCTCTGAGACGAAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCGTCCTCAAGCTGCTTACC
GGCAAAGATAAGCCTCTGTTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACATTATCAATGGTGTCTGAACTCTCAACCTCGAGGGTA
ATTGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATACCACCACGAAGACGAAGGACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAA
GAGTTCTTCCATCCTCAAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTCCTGAATCTTTGCTTTGACGTTGTCAAT
AGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATACCACCTCTTAAACGAAGAACCAAGTGGAGGGTT
GATTCTTTCTGGATATTGTAATCGGTCAAGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGT
CCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCATCTGAAA
TTAAAAAAGAGAACACGTAAAAATCGATCAGGGAACATATACCAAAGAGAAAACGGATTTAAACACAAGAACCCAAAATCAAAGAGAATCGACAAAGAAA
ACACAAAATTGAATAGATCGTTATAGAAAACCCTAATTTCCTTAAGAGAATTTCAAAACCAAGCAAGAAATTGAACAGATCTAAACGATATGCTTCATAA
GAGAAAACGCAAGAAAGATGGAATATTTCAACAACATGCAAATCTGACGAGCAACTAATAGAGATTCTTAGTAATCGACATAAAATAAAGAAGCTGGGAT
TGAAGAAACGAGCAGGTAATTTTCGAAAATCAAATTATTGAAAAATCCAATCACCCAAAAATCCAAAATCGAAGATCAAAAAAGAAAACCAAATCCAAAG
ATCAGACGCCAAAACCCAGAAGAAACGAATCAG