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Detailed information on CNT30480747


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546269Arabidopsis halleriIpomoea triloba69.9190.3182.61811forward
CNT30701438Arabidopsis halleriQuercus lobata78.5362.4481.67911forward
CNT30377520Arabidopsis halleriArabidopsis thaliana59.9168.8192.95695forward
CNT30279009Arabidopsis halleriChenopodium quinoa75.4357.2682.4875forward
CNT30379426Arabidopsis halleriManihot esculenta78.1978.3283.24907forward
CNT30709517Arabidopsis halleriGlycine max64.5780.6283.31749forward
CNT3044330Arabidopsis halleriPrunus dulcis78.5374.4984.19911forward
CNT30156153Arabidopsis halleriPistacia vera75.0975.6184.16871forward
CNT30637458Arabidopsis halleriCapsicum annuum78.5320.7582.55911forward
CNT3097291Arabidopsis halleriSolanum tuberosum77.1658.1282.35895forward
CNT30538027Arabidopsis halleriBrassica napus75.6946.3185.88878forward
CNT30238962Arabidopsis halleriBrassica oleracea79.6647.885.61924forward
CNT30171101Arabidopsis halleriTrifolium pratense78.8855.0281.97915forward
CNT30145248Arabidopsis halleriMedicago truncatula78.7146.5182.04913forward
CNT30311003Arabidopsis halleriCamelina sativa85.9584.6390.37997forward
CNT3061767Arabidopsis halleriArabidopsis lyrata86.2961.395.11001forward
CNT3079055Arabidopsis halleriBrassica juncea64.4869.0786.1748forward
CNT30460578Arabidopsis halleriSaccharum spontaneum76.7244.4882.81890forward
CNT30217449Arabidopsis halleriKalanchoe fedtschenkoi75.9558.3885.47881forward
CNT3066849Arabidopsis halleriLeersia perrieri78.5368.1982911forward
CNT30652253Arabidopsis halleriRosa chinensis78.8870.4984.7915forward
CNT30623040Arabidopsis halleriDaucus carota78.8882.3683.39915forward
CNT30410857Arabidopsis halleriPapaver somniferum78.9770.1482.97916forward
CNT30642981Arabidopsis halleriCannabis sativa78.4581.1183.41910forward
CNT3032754Arabidopsis halleriTheobroma cacao75.6966.9283.14878forward
CNT3026527Arabidopsis halleriPopulus trichocarpa77.8492.4383.94903forward
CNT30330510Arabidopsis halleriDioscorea rotundata78.0296.3882.65905forward
CNT30595410Arabidopsis halleriEragrostis curvula74.1463.0583.26860forward
CNT30726149Arabidopsis halleriLupinus angustifolius78.7147.9582.04913forward

Expression of CNT30480747

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVIVLPVRVLTKICIPPRRRSTK*

>peptide 2 (48 aa)
YLLRVETQRPVTSPRKEKQKMKLKRRDKFFPQTETQTKPGEIDHLPSA*

>peptide 3 (30 aa)
MVLPVRVLTKICIPPLKRRTKWRVDSFWIL*

>peptide 4 (30 aa)
MVLPVRVFTKICIPPLRRSTKWRVDSFWML*

>peptide 5 (71 aa)
MKCRLLLDVVVSKSPSILKLLPGKDKPLLVRRDSFFVLNLCFDVVNSVRALNFQSNGLASQSLDKDLHTTS*

>peptide 6 (72 aa)
MRHEPLIIRSQKALEATTTKTKNQVKSRFLLDVVISQSPTILKLFTSEDESLLVWWDPFLVLNLSLDIINCV*

Sequence

>CNT30480747
GTTATTTATTGAGAGTTGAAACACAAAGGCCCGTTACAAGCCCAAGAAAAGAAAAGCAGAAAATGAAACTTAAAAGACGGGACAAGTTTTTCCCGCAGAC
GGAAACACAAACTAAACCAGGTGAAATAGATCACCTCCCAAGTGCATGAGACACGAACCACTTATCATCAGATCACAAAAAGCTTTAGAAGCTACCACCA
CGAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTCCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTCT
GTTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACATTATCAATTGTGTCTGAGCTCTCCACCTCCAAAGTTATGGTCTTGCCGGTAAG
GGTCTTCACAAAGATCTGCATACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCTAGGGTACGACCATCCTCT
AGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCCTCTTTATCCTGAATCTTAGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAA
CCTCGAGGGTGATTGTTTTACCAGTGAGAGTCTTGACAAAGATTTGCATACCACCACGAAGACGAAGCACCAAATGAAGTGTCGACTCCTTCTGGATGTT
GTAGTCAGCAAGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTCCTGAATCTTTGCTTTG
ACGTTGTCAATAGTGTCAGAGCTCTCAACTTCCAAAGTAATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATACCACCTCTTAAACGGAGAACCA
AGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGCCAAGGTACGGCCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAAT
GCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATT
TGCATCTGAAATTAAAAAAGAGAACATATTATGCTAGAGCGATTTAGGGTTTGGGAGAGA