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Detailed information on CNT30330510


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-137

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30701241Dioscorea rotundataQuercus lobata93.8285.8780.93881forward
CNT30377520Dioscorea rotundataArabidopsis thaliana68.2663.4783.31641forward
CNT30279009Dioscorea rotundataChenopodium quinoa95.5358.783.61897forward
CNT3097927Dioscorea rotundataSolanum tuberosum89.6763.3682.42842forward
CNT30511508Dioscorea rotundataSolanum lycopersicum84.8860.9383.19797forward
CNT3061767Dioscorea rotundataArabidopsis lyrata96.3855.4282.32905forward
CNT30626005Dioscorea rotundataDaucus carota96.727.4182.6908forward
CNT30480747Dioscorea rotundataArabidopsis halleri96.3878.0282.65905forward
CNT30408298Dioscorea rotundataPapaver somniferum92.3360.6382.12867forward

Expression of CNT30330510

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MKGGLLLDVIVCQCAAVLELLPSKDEPLLIRRNTFFVLDFSLDVVYCIGALNLKGYSFTSQGLDKDLHASTKPENQVQG*

>peptide 2 (30 aa)
MVFPVSVLTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (31 aa)
MVSELSTSRVMVLPVSVFTKICMPPRSRRTR*

>peptide 4 (33 aa)
MPSLSWIFVLTLSIVSELSTSRVMVFPVSVLTKI

Sequence

>CNT30330510
ATTTAAAGCAAGTCATATTGTCTAGTTAGCGCCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGTATATTGTAGTCAGCCAAGGTGCGA
CCATCGTCAAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGGGGTATGCCCTCCTTATCTTGAATCTTGGCCTTCACATTATCAATGGTGTCGG
AACTCTCAACCTCAAGAGTAATGGTTTTGCCTGTGAGTGTCTTCACAAAGATTTGCATGCCACCTCGCAGCCGAAGAACAAGATGAAGGGTGGACTCCTT
CTGGATGTTATAGTCTGCCAGTGTGCGGCCGTCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGAGGAATACCTTCTTTGTCCTGGATT
TTAGTCTTGACGTTGTCTATTGTATCGGAGCTCTCAACCTCAAGGGTTATAGTTTTACCAGTCAGGGTCTTGACAAAGATCTGCATGCCTCCACGAAGCC
GGAGAACCAGGTGCAGGGTTGATTCCTTTTGGATGTTATAGTCTGCCAAAGTTCGGCCATCTTCAAGCTGTTTACCCGCAAAGATAAGCCTCTGCTGATC
AGGGGGAATCCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCAATTGTGTCTGAGCTCTCAACCTCAAGGGTGATGGTCTTCCCAGTTAGTGTCTTA
ACAAAGATCTGCATGCCTCCACGTAGGCGGAGAACCAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCCTCAAGTTGCT
TACCGGCAAAGATTAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTTGTCTTGACATTGTCAATAGTGTCTGAGCTCTCTACCTCAAG
AGTGATGGTCTTTCCAGTTAGTGTCTTAACAAAGATCTG