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Detailed information on CNT3027808


BLAST search results

BLAST vs Swiss-Prot:
sp|P69322|UBIQP_PEA, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 7e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377520Theobroma cacaoArabidopsis thaliana58.7967.5283.87682forward
CNT30406246Theobroma cacaoBeta vulgaris56.8198.2183.31659forward

Expression of CNT3027808

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MQGGFLLDVVVCQSSPILQLLPSKNQPLLVWRDPLLVLDLCLHIINGV*

>peptide 2 (88 aa)
MVSELSTSNVIVFPVKVFTNICIPPRKRNTNCLPAKMSLCWSGGIPSLSWIFAFTLSMVSELSTSNVIVFPVRVFTKICIPPRRRRTK*

Sequence

>CNT3027808
TAAACACCGGCCAATAAGCAAAAACAATTCATTGAAGAACCAAACACCCTGACTGCTGCATCACTTCTAAACTTAAAAGCCACCACGAAGGCGAAGAACA
AGATGCAAGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGAGTTCTCCCATCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGAGGGA
TCCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAGCTATCAACCTCCAACGTTATTGTCTTTCCAGTCAAGGTCTTCACAAATAT
CTGCATCCCACCACGTAAACGCAACACCAACTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATACCCTCCTTATCTTGGATCTTTGCCTTC
ACATTATCAATGGTGTCTGAACTCTCAACCTCCAATGTGATAGTCTTTCCGGTAAGAGTCTTCACAAAAATTTGCATCCCACCACGAAGACGGAGAACCA
AGTGAAGGGTTGACTCCTTTTGAATGTTATAATCAGCAAGTGTCCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATCAACCTCTGCTGATCTGGTGGGAT
ACCCTCTTTATCCTGAATCTTAGCCTTGACATTGTCAATAGTGTCCGAGCTCTCTACCTCCAAAGTGATCGTTTTACCTGTGAGAGTCTTGACAAAGATT
TGCATGCCACCTCGAAGACGAAGCACCAAATGAAGGGTGGACTCCTTCTGGATATTATAGTCAGCTAGGGTGCGACCGTCTTCAAGCTGTTTGCCAGCAA
AGATAAGTCTTTGTTGATCAGGAGGGATTCCTTCCTTGTCTTGGATCTTCGCTTTAACATTGTCAATAGTATCAGAGCTCTCAACCTCCAAGGTGATAGT
CTTTCCCGTGAGAGTCTTGACAAAGATTTGCATACCACCACGGAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTATAGTCAGCTAGGGTT
CGACCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCAGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATAGTAT
CAGAGCTCTCAACCTCAAGGGTGATGGTCTTGCCTGTTAGGGTTTTCACAAAGATTTGCA