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Detailed information on CNT30376493


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3044110Arabidopsis thalianaPrunus dulcis11.3825.68875reverse complement
CNT3079275Arabidopsis thalianaBrassica juncea28.9848.4891.62191forward
CNT30613819Arabidopsis thalianaArabis alpina29.7433.5691.33196forward
CNT30650833Arabidopsis thalianaRosa chinensis11.9926.0792.4179reverse complement
CNT30477320Arabidopsis thalianaArabidopsis halleri24.7335.6793.25163reverse complement
CNT30114440Arabidopsis thalianaEutrema salsugineum30.3526.7792.5200forward

Expression of CNT30376493

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSFCYPSSQRKLAMTVAFFASGAALFAIGIHFSYLNVAPQQARTKARNDFVKERLRQKQGK*

>peptide 2 (63 aa)
AFYGPLKNDINIKYGDAGYRSPCLSHAKRALYHLSYIPIVMHTDSFYYKACLCQICRNIIEGS*

Sequence

>CNT30376493
GCTTTCTATGGGCCCTTGAAAAATGATATCAACATAAAATATGGAGATGCGGGGTATCGATCCCCGTGCCTCTCGCATGCTAAGCGAGCGCTCTACCATC
TGAGCTACATCCCCATTGTGATGCATACTGATTCGTTTTACTACAAAGCGTGTCTTTGCCAAATTTGTCGGAACATCATCGAAGGTAGTTAATTAACTGC
TGTCTGAAGATCTATGAATCCTCGTACTGTGCCGTACGTGTCTTTTGCCGCTGAAACTCGGGACTTCCCCTCTTATGGTTAAAACTTTAAAAAAAACAGA
AACCTTGAATTTGTAGCAAACGAAGAGTTGATAGCTTTGAGGATGTCGTTTTGCTATCCATCTTCACAAAGAAAACTGGCAATGACGGTGGCATTTTTTG
CCTCAGGGGCTGCTCTTTTCGCCATTGGAATCCATTTTTCGTATCTCAACGTTGCTCCTCAGCAAGCTCGTACTAAAGCCCGTAATGATTTTGTCAAAGA
ACGCCTCAGGCAGAAACAAGGCAAGTGATTTCAGATTTACATTGAGATTCCTTAAAGAAACAATGTCATAAGAAATTACTGTAACTGGTTTCAGATACAA
AGTTTTGGTCCTAATATCATTGGAGAATTGTGATCATTGTCTTACCTTTTCGGAGCGAA