Detailed information on CNT30477320


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376493Arabidopsis halleriArabidopsis thaliana35.8924.8993.29164reverse complement
CNT3079275Arabidopsis halleriBrassica juncea27.3531.7389.6125reverse complement
CNT30613819Arabidopsis halleriArabis alpina26.4820.7291.74121reverse complement
CNT30114440Arabidopsis halleriEutrema salsugineum27.5716.8792.06126reverse complement

Expression of CNT30477320

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKTRRWGKSMHKLIKDIRDVTYMIAATMGLAYVSGKISPEIILRIGK*

>peptide 2 (34 aa)
TLGSQFSIDIRTKNFVSETNYSNINSFQKLTLFL*

>peptide 3 (29 aa)
MDSKTTFSMLSQLFVCYKFKASVFNKTRCN

Sequence

>CNT30477320
AACACTAGGATCACAATTCTCCATTGATATTAGGACCAAAAACTTTGTATCTGAAACCAATTACAGTAACATAAATTCTTTTCAGAAATTGACATTGTTT
CTTTAAGGTCATGCGTTTTAAGACAATATGAAAACCCGTCGATGGGGAAAATCCATGCATAAGCTCATTAAGGACATCCGAGATGTGACATACATGATCG
CCGCAACGATGGGATTGGCCTACGTCTCGGGCAAGATCAGCCCTGAGATTATCCTGAGGATTGGGAAATGAGCAACGTTAAGATACGAAAAATGGATTCC
AATGGCGAAAAGAGCTGCCCCTGAGGCAAAACACGCCACCGTCATCGCCAGTTTTCTTGGTGAAGATGGATAGCAAAACGACATTCTCAATGCTATCTCA
ACTCTTCGTTTGCTACAAATTCAAGGCTTCTGTCTTCAATAAAACAAGATGTAATGA