Detailed information on CNT30650833


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376493Rosa chinensisArabidopsis thaliana26.0711.9992.4179reverse complement
CNT30268805Rosa chinensisChenopodium quinoa24.426.8890.5474reverse complement
CNT3090321Rosa chinensisSolanum tuberosum24.0911.1190.4173forward
CNT30251599Rosa chinensisAvena sativa24.0911.3291.7873reverse complement
CNT30613023Rosa chinensisArabis alpina24.0910.8591.7873reverse complement
CNT30414507Rosa chinensisPapaver somniferum27.727.3792.8684reverse complement
CNT30328380Rosa chinensisAsparagus officinalis24.759.8990.6775forward
CNT3063925Rosa chinensisSelaginella moellendorffii22.774.3389.8669reverse complement

Expression of CNT30650833

Peptides detected in this lncRNA

>peptide 1 (34 aa)
WGCSSNGRALALHARGTGFDPLHLHIYFIFCQNK*

>peptide 2 (44 aa)
GDVAQMVERSLCMREAQGSIPCISIFILFFAKTNKIPTGSGPDI*

Sequence

>CNT30650833
TGGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGCACAGGGTTCGATCCCCTGCATCTCCATATTTATTTTATTTTTTGCCAAAACA
AATAAAATCCCCACAGGATCTGGACCGGACATCTGAAACCAACACAAAACGGTGCGTATTAGCACCCAACTCGAACAAACTTAACCGTCTCTACATAAAC
CCTCGCAATCTGTCGTCGTCGCCCCAACCCTGCTGTTTCTCCGATTTAGACCAATCCCAATCAAATTTCTCCGCCGCATTATCTTACCTCGCCGCCGCCG
TCG