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Detailed information on CNT30114440


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376493Eutrema salsugineumArabidopsis thaliana26.7730.3592.5200forward
CNT3079275Eutrema salsugineumBrassica juncea29.8556.690.58223forward
CNT30613819Eutrema salsugineumArabis alpina26.3733.7392.39197forward
CNT30477320Eutrema salsugineumArabidopsis halleri16.8727.5792.06126reverse complement

Expression of CNT30114440

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MVFVFCFLVPTSPFHLCTLNSVLCSVENRDNVNCN*

>peptide 2 (29 aa)
MILSKNVSGRNKESDFQVQIMSQNRTISS*

>peptide 3 (61 aa)
MSFCYPSSPRKVAMTVAFFASGAALFAIGIHLSYLNVAPQQARTKARNDFVKERLRQKQGK*

>peptide 4 (46 aa)
SLSTLIHLSLYRARCNKIKSTELDLLQTWFETSVVISLQTSFTFPS*

Sequence

>CNT30114440
CTCTCTCTCTACTTTAATACATTTGTCTCTCTACCGAGCTCGCTGTAACAAAATAAAAAGCACCGAACTGGATCTGCTCCAGACTTGGTTCGAAACATCA
GTTGTTATCTCATTGCAAACATCCTTTACGTTTCCGAGCTGACACTTTCTTTTTCCCCTTAACTAAATCACTCTTATTATACGAAAATCTCACCCCGAAA
TCATCTCTAATCATTCTCATAATCTATTAAACATACTTAATGATCTCCAGGATCAACAGTGTCAACGATGATCATCGCTGTCTCAAGATTTTCTGATCTT
CGTATTGTATTTGTCTGAAGCTGTGTGCTTCCACTTTTATGCAAACGAAGAGTTGATTCCATCTGGGATTTAGCATTGAGAATGTCGTTTTGCTATCCAT
CATCACCCAGAAAAGTGGCGATGACGGTGGCGTTTTTTGCCTCTGGGGCTGCTCTTTTCGCCATTGGAATCCATCTCTCGTATCTCAACGTCGCTCCTCA
GCAAGCTCGCACTAAAGCCCGTAATGATTTTGTCAAAGAACGTCTCAGGCAGAAACAAGGAAAGTGATTTTCAGGTTCAGATCATGTCCCAAAACAGAAC
CATTTCTTCTTGATGGTTTTTGTTTTTTGTTTTTTGGTTCCGACTTCACCATTTCACCTCTGTACGCTCAACTCAGTTCTTTGCTCTGTAGAGAATAGAG
ATAACGTAAATTGCAATTGAGAAAACAAATCTCACTTTTGTCTGGAA