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Detailed information on CNT30613819

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30376493	Arabis alpina	Arabidopsis thaliana	33.56	29.74	91.33	196	forward
CNT3079275	Arabis alpina	Brassica juncea	32.71	48.48	89.01	191	forward
CNT30477320	Arabis alpina	Arabidopsis halleri	20.72	26.48	91.74	121	reverse complement
CNT30114440	Arabis alpina	Eutrema salsugineum	33.73	26.37	92.39	197	forward

Expression of CNT30613819

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSFCYPSSPRKLAMTVACFASGAALFAIGIHLSYLNVAPQQARTKARNDFVKERLRQKQGK*

>peptide 2 (42 aa)
MILSKSASGRNKASDFPIQLMPLNYTKKFDGTNITTKVCSKF*

Sequence

>CNT30613819
CTCGCATGCTAAGCGAGCGCTCTACCATCTGAGCTACATCCCCATTGCGATTAGGTGTTGGTGATTTATTTACTTTTATTAAAGCAAACAAATTCCTTGC
CAAATTTATCGCCATCGAATCCGAAGATCATAATCGCTGTCGGAAGATATTGCGATCCTCGTACTGTTCGCATCTTGAGGATTTACCTCTTGTAGTAAAC
AGCTAACGAAGACTTGTGTTTGAGAATGTCGTTTTGCTACCCATCATCGCCTAGAAAATTGGCCATGACGGTGGCGTGTTTTGCCTCAGGGGCAGCTCTT
TTCGCCATTGGAATCCATCTCTCCTATCTCAACGTTGCTCCTCAGCAGGCTCGGACTAAAGCCCGTAATGATTTTGTCAAAGAGCGCCTCAGGCAGAAAC
AAGGCAAGTGATTTTCCAATTCAGCTTATGCCCCTGAACTACACTAAAAAGTTTGATGGGACTAATATAACTACAAAAGTTTGTTCCAAGTTCTAACTAC
ATTTGAAACTTCAAACAAGTCTTATTGTAACAAACCTTTGAATGTTTGATGTTAGTATCAACAGAACCGCTCCACTGAAAAACG