Detailed information on CNT3079275


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376493Brassica junceaArabidopsis thaliana48.4828.9891.62191forward
CNT30613819Brassica junceaArabis alpina48.4832.7189.01191forward
CNT30477320Brassica junceaArabidopsis halleri31.7327.3589.6125reverse complement
CNT30114440Brassica junceaEutrema salsugineum56.629.8590.58223forward

Expression of CNT3079275

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MSFCYPSSPRKLAMTVAFFASGAALFAVGMHLSYLNVAPQQARTKARNDFVKERLRQKQGK*

>peptide 2 (82 aa)
RFSDVIVLSRRSSGTPLQRNEELIIQSDLGLKSTEYVVLLSIITKETGDDGCFLCLRGSSFRRWNASVVSQRCSSASSYQSS*

Sequence

>CNT3079275
TGAGATTTTCCGATGTTATTGTATTGTCCCGTAGAAGCTCAGGGACTCCCCTCCAACGGAACGAAGAGTTGATTATTCAATCTGATCTGGGATTAAAGAG
CACTGAGTATGTCGTTTTGCTATCCATCATCACCAAGGAAACTGGCGATGACGGTTGCTTTCTTTGCCTCAGGGGCAGCTCTTTTCGCCGTTGGAATGCA
TCTGTCGTATCTCAACGTTGCTCCTCAGCAAGCTCGTACCAAAGCTCGTAATGATTTTGTCAAAGAACGTCTCAGGCAGAAACAAGGCAAGTGAATTCTC
AGATTCAGATCATGTCCCAAACACATAAGCGTTTCTTTTTTTAGTTGTCTTCTTACTTTCAGCATTTCCATCCTTTTTATCTATGTACTCTCCA