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Detailed information on CNT30577713


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6K7E6|ERF1_ORYSJ, E-value = 6e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696213Oryza barthiiOryza sativa72.9310099.77862forward
CNT30555000Oryza barthiiOryza glaberrima95.3596.161001127forward
CNT30596811Oryza barthiiOryza meridionalis74.295.0299.09877forward
CNT30371038Oryza barthiiOryza glumipatula92.9896.1599.731099forward
CNT30103395Oryza barthiiOryza rufipogon99.5898.6699.751177forward

Expression of CNT30577713

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFISNVSVEARGLTGGMRSTGSAGFEGTFASIANKSLSELFS*

>peptide 2 (39 aa)
MFQAKHGHPCWGLGFQLPICPRDAGGSPCTDSSSCALPI*

>peptide 3 (35 aa)
MSSSSRLQMPSLLAPSCVASFCRRLSIDSSELLST*

Sequence

>CNT30577713
ATTACAGCACACACATGGCCAAGGCAGTTATTTGAATCAGTCTCCAACATACTTCAAATCATAGACCACACCATACAGCAAACATAGTATAAACATTGTC
ATAGAGAGTACAGCTGATAGCAGCTTGTAATATTCTAGCATTACTTTGGTAGCATCCCTCTACAAAACATAGCAGACATCACCAGCTCTTCATCTTGGCC
ATACACATTCAACCTGACAAGAAAACCATATCCCATTTTACAACATATGTAATCTGTACATGAAAATGTATCTACAAGAAATCAAAATAGTAGGTAGTGT
GGAGTGCCTTACATGGTTTGCTAGTGACAGACCACACTGACCAGAACATTTCGTCTCCTCAGTAGGCACCAGCTGCCATGAGCAGCTCATCAAGGCTCCA
GATGCCCTCGTTGCTTGCCCCGTCTTGTGTAGCATCATTTTGCAGAAGGTTGTCCATTGATTCATCTGAGCTGCTCTCAACATAAGGTGGGCATGTTTTG
TGCGAGATTAGGCATGCCATTTCCCTGGGGCACGGCGATACCATAGTTGTTCCTCATTCTCTTTGGCGCTCCACCTGTCAGGTAAGCAGGTTCACCATAT
GCTGGCATGGCAGCATTAGGAACGAAGACAGAAGTGTAGTCTGGGGTCAGGGTGTCATCCTCCCAACCAAAGTCTGAAGAGCCAAATGAGTTGCTGCTCG
TATCAGAGAGCATGTTCATCTCGAATGTCTCAGTGGAAGCAAGAGGTTTGACTGGAGGCATGAGATCAACAGGCTCTGCCGGCTTTGAAGGCACCTTTGC
AAGCATTGCAAACAAATCATTGTCTGAACTGTTTAGCTGAAAGAAAGCATCATCGCCACAGGTCTTCAGAGGTGGAGCTAGTTTCTCTTGCTTGGCAGCG
TTTTGCTTCAGGGAGAGCTTCTGAGCAACAGCTGGTTCATCAGGAAAGTTGACCTTGGCTTTCTTGCCACGGATCTTGCGGGCTTCAGCGTCATATGCCC
TAGCTGCCTCCTCAGCAGTGTTATATGTTCCAAGCCAAACACGGACACCCTTGCTGGGGTCTCGGATTTCAGCTGCCCATTTGCCCCAGGGACGCTGGCG
GATCCCCCTGTACTGATTCTTCCTCTTGCGCTTTGCCGATCTAGCAGTAGGTCCATCATGTTGGACAAGCTTTGTAGTCAAC