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Detailed information on CNT30370320


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKF0|RL102_ORYSJ, E-value = 7e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672710Oryza glumipatulaSetaria viridis45.592.0186.11288forward
CNT30518730Oryza glumipatulaJuglans regia19.7521.485.6125forward
CNT30372507Oryza glumipatulaArabidopsis thaliana19.7527.2982.4125forward
CNT30499527Oryza glumipatulaCoffea canephora36.4948.7380.52231forward
CNT3070749Oryza glumipatulaQuercus suber24.4938.4683.23155forward
CNT30486394Oryza glumipatulaOlea europaea27.3342.6183.82173forward
CNT30711461Oryza glumipatulaGlycine max22.1241.7984.29140forward
CNT30219795Oryza glumipatulaHordeum vulgare16.1141.1395.1102forward
CNT30383518Oryza glumipatulaTriticum turgidum19.4346.9592.68123forward
CNT30568953Oryza glumipatulaActinidia chinensis35.3943.1679.91224forward
CNT30135086Oryza glumipatulaLolium perenne45.548.8188.89288forward
CNT30610309Oryza glumipatulaGossypium raimondii24.9624.9284.18158forward
CNT30364215Oryza glumipatulaSorghum bicolor32.3961.5685.37205forward
CNT30105016Oryza glumipatulaOryza longistaminata36.8139.6387.55233forward

Expression of CNT30370320

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MATKELELGTTEGFAGMDSIVGLAPHRKEDLANIHPSAGSLWLPESTPHSGLEPICPGTRKHLVDTEHMERVNPNPEVEGILSCRLGHVLVARDTRSLK

Sequence

>CNT30370320
CATTGCTGATCAGATATACACGATGCATCCGATATTTAAGAGTATGTATGTATAGATGAAATAAGCAGCAACTGATTAGCGACACGAAAGTCATCTGATA
TATATTTCAGATAAAGATGTTCAACACAAGATAGCTTCAGACAAGGCGATATAGCACCAGACACTTGGTGATTCAGGGTTCAACAAAGTGATATGATCGC
GTCTACAAACAAACAAAAAGGTCCGAAATTTCGTTTCCCATAGATAAGATTTCGTTTCCCACAGATAATATGGATAGATATATCTAAGCGGCTGAGAGGA
AGGCCTTCCCGGGGGCACGAGCAGAGAGGCGACCATGGCAACCAAGGAACTTGAACTTGGCACGACGGAGGGCTTCGCTGGCATGGACAGCATTGTTGGG
CTTGCACCGCACAGAAAGGAGGACCTGGCCAATATCCACCCTAGCGCAGGTTCCCTGTGGCTTCCCGAAAGCACCCCTCATTCCGGTCTGGAGCCTATCT
GCCCCGGCACACGAAAGCATCTTGTTGATACGGAGCACATGGAACGGGTGAACCCGAACCCTGAGGTGGAAGGCATCCTTTCCTGCAGACTTGGTCATGT
ACTTGTTGCACGCGATACGCGCAGCCTCAAGAG