« Back to Sorghum bicolor search


Detailed information on CNT30364215


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0ITS8|RL101_ORYSJ, E-value = 4e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676624Sorghum bicolorSetaria viridis71.7783.8691.21239forward
CNT30518730Sorghum bicolorJuglans regia21.3212.1688.7371forward
CNT30372507Sorghum bicolorArabidopsis thaliana26.7319.4384.2789forward
CNT30499527Sorghum bicolorCoffea canephora29.4320.6891.8498forward
CNT3070749Sorghum bicolorQuercus suber66.3754.8483.71221forward
CNT30486394Sorghum bicolorOlea europaea30.6325.1289.22102forward
CNT30711461Sorghum bicolorGlycine max26.1325.9789.6687forward
CNT3094211Sorghum bicolorSolanum tuberosum43.8458.6381.51146forward
CNT30284964Sorghum bicolorTriticum aestivum27.0319.8293.3390forward
CNT30219795Sorghum bicolorHordeum vulgare60.3681.0590.55201forward
CNT30568953Sorghum bicolorActinidia chinensis43.8428.1385.62146forward
CNT30135086Sorghum bicolorLolium perenne62.1635.0884.06207forward
CNT30610309Sorghum bicolorGossypium raimondii22.2211.6791.8974forward
CNT30370320Sorghum bicolorOryza glumipatula61.5632.3985.37205forward
CNT30105016Sorghum bicolorOryza longistaminata68.7738.9592.14229forward

Expression of CNT30364215

Peptides detected in this lncRNA

>peptide 1 (63 aa)
ADDLLAARELEFGTAEGFFSMISIAFLAAHRKEDLTNVHTSAGTLGLAKSTPHSSLEPISPST*

>peptide 2 (34 aa)
MEWVDAEGELIHSLLLHPNIIDPDLGVRDTTAVP*

>peptide 3 (56 aa)
MSTRAQVPWGLPKAPLIPVWSRSAPAHESILLIRRTWNGWTQKGNSSTPFFFIPTS*

Sequence

>CNT30364215
CTGCGGATGATCTTTTGGCGGCCAGGGAACTTGAATTTGGCACGGCGGAGGGCTTCTTCAGCATGATTAGCATTGCTTTCCTTGCAGCGCACAGAAAGGA
GGACCTGACCAATGTCCACACGAGCGCAGGTACCCTGGGGCTTGCCAAAAGCACCCCTCATTCCAGTCTGGAGCCGATCAGCCCCAGCACATGAAAGCAT
CTTGTTGATACGAAGGACATGGAATGGGTGGACGCAGAAGGGGAACTCATCCACTCCCTTCTTCTTCATCCCAACATCATAGATCCTGATCTTGGGGTCA
GGGACACCACGGCAGTACCTTGACTTCGGGTAT