Detailed information on CNT30219795


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKF0|RL102_ORYSJ, E-value = 1e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676624Hordeum vulgareSetaria viridis87.976.4991.28218forward
CNT30518730Hordeum vulgareJuglans regia26.6111.390.9166forward
CNT30372507Hordeum vulgareArabidopsis thaliana38.3120.7485.2695forward
CNT30499527Hordeum vulgareCoffea canephora33.8717.7292.8684forward
CNT3070749Hordeum vulgareQuercus suber37.122.8389.1392forward
CNT30486603Hordeum vulgareOlea europaea41.5317.4987.38103forward
CNT30711461Hordeum vulgareGlycine max32.2623.8888.7580forward
CNT3094211Hordeum vulgareSolanum tuberosum41.5341.3786.41103forward
CNT30284964Hordeum vulgareTriticum aestivum50.427.5396.8125forward
CNT30568953Hordeum vulgareActinidia chinensis46.7722.3583.62116forward
CNT30135086Hordeum vulgareLolium perenne52.4222.0392.31130forward
CNT30610309Hordeum vulgareGossypium raimondii33.4713.0989.1683forward
CNT30364215Hordeum vulgareSorghum bicolor81.0560.3690.55201forward
CNT30370320Hordeum vulgareOryza glumipatula41.1316.1195.1102forward
CNT30105016Hordeum vulgareOryza longistaminata47.9820.2494.96119forward

Expression of CNT30219795

Peptides detected in this lncRNA

>peptide 1 (41 aa)
WPMATRAQTPCGFPKAPLIPVWSLSAPAHESILLIRSTWNG*

>peptide 2 (34 aa)
PGQWQHGHRLPAASRKHPSYQSGAYQPQHTKASC*

>peptide 3 (72 aa)
LANGNTGTDSLRLPESTPHTSLEPISPSTRKHLVDTEHMERVNTVGELIHALLLHANIIDPDLRVRHTTAVP*

Sequence

>CNT30219795
CCTGGCCAATGGCAACACGGGCACAGACTCCCTGCGGCTTCCCGAAAGCACCCCTCATACCAGTCTGGAGCCTATCAGCCCCAGCACACGAAAGCATCTT
GTTGATACGGAGCACATGGAACGGGTGAACACAGTGGGAGAACTCATCCACGCCCTTCTTCTTCATGCCAACATCATAGATCCTGATCTTAGGGTCAGGC
ACACCACGGCAGTACCTTGACTTGGGGTATGGCTTGTTCTTGATCTGC