Detailed information on CNT30672710


BLAST search results

BLAST vs Swiss-Prot:
sp|P45633|RL10_MAIZE, E-value = 4e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518730Setaria viridisJuglans regia45.0524.1483.69141forward
CNT30486394Setaria viridisOlea europaea54.3141.8785.88170forward
CNT30383518Setaria viridisTriticum turgidum40.5848.4796.06127forward
CNT30568953Setaria viridisActinidia chinensis51.7631.2182.72162forward
CNT30135086Setaria viridisLolium perenne55.5929.4995.4174forward
CNT30610309Setaria viridisGossypium raimondii68.6933.9183.26215forward
CNT30370320Setaria viridisOryza glumipatula92.0145.586.11288forward
CNT30105016Setaria viridisOryza longistaminata101.654.0883.33318forward

Expression of CNT30672710

Peptides detected in this lncRNA

>peptide 1 (60 aa)
PLSALNDLLAARELELGTTQSLASMGSIAVLAAHRKEDLANVHPSTGTPHSSLEPISPSA*

>peptide 2 (34 aa)
MERVNPDPEVEGILSCRLGHVLVASDTGSLKSLTG

>peptide 3 (72 aa)
HFLLSMIFWRPGNLNLARRRASLAWAALLSLQRTERRTWPMSTLAQAPLIPVWSLSAPAHESILLIRSTWNG*

Sequence

>CNT30672710
CCACTTTCTGCTCTCAATGATCTTTTGGCGGCCAGGGAACTTGAACTTGGCACGACGCAGAGCCTCGCTAGCATGGGCAGCATTGCTGTCCTTGCAGCGC
ACAGAAAGGAGGACCTGGCCAATGTCCACCCTAGCACAGGCACCCCTCATTCCAGTCTGGAGCCTATCAGCCCCAGCGCATGAAAGCATCTTGTTGATAC
GGAGCACATGGAACGGGTGAACCCGGACCCTGAGGTGGAAGGCATCCTTTCCTGCAGACTTGGTCATGTACTTGTTGCAAGCGATACGGGCAGCCTCAAG
AGCCTCACTGGAG