Detailed information on CNT30518730


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SPB3|RL10_VITRI, E-value = 2e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672710Juglans regiaSetaria viridis24.1445.0583.69141forward
CNT3094211Juglans regiaSolanum tuberosum12.3328.9286.1172forward
CNT30219795Juglans regiaHordeum vulgare11.326.6190.9166forward
CNT30364215Juglans regiaSorghum bicolor12.1621.3288.7371forward
CNT30370320Juglans regiaOryza glumipatula21.419.7585.6125forward

Expression of CNT30518730

Peptides detected in this lncRNA

>peptide 1 (31 aa)
HRNRCSAVQQRFKDLTRVQRSKTETKSKIRQ*

>peptide 2 (33 aa)
MIFCRPGNLNLALLSASCAWVPFASLHRTDSST*

>peptide 3 (34 aa)
MTNCLNAKKSSCRIQYFTQESLPWTPHSKGSMAS*

>peptide 4 (69 aa)
MGAICIFASDRQQYLTNTYPGTSHTSLEPICSSTRKHLVDTQDMERMDSHSKVECIFSCKLGHVLVARNA

Sequence

>CNT30518730
CATCGAAATAGATGTTCAGCAGTTCAACAAAGGTTCAAAGATTTAACGAGGGTTCAAAGATCCAAAACGGAAACAAAGTCTAAAATAAGACAATAAGGTA
TTCATTAATTCTGATGACAAACTGTCTGAACGCCAAGAAATCAAGCTGCAGGATTCAATACTTCACTCAAGAAAGCCTTCCCTGGACGCCTCACAGCAAG
GGGTCCATGGCATCCTAAGAGCTTAGCATTCACTCCATCCGGCTGAATCCTGTTCTCCTGTTTCCACTTGACATAGTCAGTTCTGCTGAACTTTGTGAAG
CCCCATTTGCGGCTGACAATGATCTTCTGTCGTCCAGGAAACTTGAACTTGGCCCTTCTGAGTGCTTCCTGTGCATGGGTGCCATTTGCATCTTTGCATC
GGACAGACAGCAGTACCTGACCAATACTTACCCTGGCACCTCGCATACCAGTTTGGAGCCTATCTGCTCCAGCACAAGAAAGCATCTTGTTGATACGCAG
GACATGGAAAGGATGGACTCTCACTCGAAGGTGGAATGCATCTTTTCCTGCAAACTTGGCCATGTACTTGTTGCACGCAATGCG