Detailed information on CNT30287698


BLAST search results

BLAST vs Swiss-Prot:
sp|P25777|ORYB_ORYSJ, E-value = 3e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553522Triticum aestivumOryza glaberrima47.5255.5284.08201forward
CNT3017169Triticum aestivumZea mays59.5785.7180.56252forward
CNT30608642Triticum aestivumGossypium raimondii21.2813.0485.5690forward
CNT30340129Triticum aestivumEragrostis tef269.9282.73110forward
CNT30370041Triticum aestivumOryza glumipatula30.512.582.17129forward
CNT30575980Triticum aestivumOryza barthii27.4256.3181.03116forward
CNT30603971Triticum aestivumOryza punctata36.889.9682.05156forward

Expression of CNT30287698

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSCGRSSSPCRSQCHSQQQPHHGQVACHTFH*

>peptide 2 (34 aa)
MAIPHFPLVTLMLRSMRRYPDSPQFGPHELRTIQ*

>peptide 3 (42 aa)
VVRRAAAGVILAAGCAFGRAAAPHQAKVPEAERAAAGAACRA*

Sequence

>CNT30287698
GTAGTCCGGCGGGCAGCAGCTGGAGTGATCCTTGCAGCAGGTTGCGCCTTCGGCCGGGCAGCAGCCCCACACCAGGCAAAGGTTCCTGAAGCCGAACGAG
CAGCAGCAGGTGCTGCCTGCAGGGCATGAGAAGTTCTCGTCGCAGACGTGGTCAGGGGCGACTGGGGGAGGTGTTGGGGCTGGCTTGGGCGGGTTAGCGC
CCTTCTTGGTGGGGTACGATGACATCATGGCTATCCCGCACTTCCCACTGGTCACGTTGATGTTGCGCTCCATGCGGAGGTACCCAGATTCTCCCCAGTT
TGGACCCCATGAGTTGCGGACGATCCAGTAGTCCTTGCCGTTCTCAGTGCCATAGCCAACAGCAACCACACCATGGTCAAGTTGCGTGCCACACCTTCCA
CTGAAGACACCCTGTAATGTAGA