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Detailed information on CNT30284964


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DKF0|RL102_ORYSJ, E-value = 8e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671183Triticum aestivumSetaria viridis38.1161.5787.86173forward
CNT30518747Triticum aestivumJuglans regia23.7915.5681.48108forward
CNT30372507Triticum aestivumArabidopsis thaliana40.9740.6184.95186forward
CNT30499527Triticum aestivumCoffea canephora42.7340.9386.08194forward
CNT30486603Triticum aestivumOlea europaea47.3636.583.26215forward
CNT30711461Triticum aestivumGlycine max40.9755.5283.87186forward
CNT30219795Triticum aestivumHordeum vulgare27.5350.496.8125forward
CNT30383518Triticum aestivumTriticum turgidum31.7254.9699.31144forward
CNT30135086Triticum aestivumLolium perenne46.0435.4295.22209forward
CNT30610309Triticum aestivumGossypium raimondii40.7529.1882.7185forward
CNT30364215Triticum aestivumSorghum bicolor19.8227.0393.3390forward
CNT30105016Triticum aestivumOryza longistaminata48.937.7691.89222forward

Expression of CNT30284964

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MASFPACLVMYLLQAIRAASRASLDTFSFSHETR*

>peptide 2 (47 aa)
MRQTGKLVQGHGSPGGHGILSCMLGHVLVASNTGSLKSLTGHILLLP*

Sequence

>CNT30284964
GCAGCAATGATTCAACAGGCCATTCATATTAGTACCATCATCACAAAATAGATAATATCTTCCATAACAAGGTTCGACACAACATTCAGACAAAATAACA
TAGCACCACAGGCACTTGGAATCTAAGTTCCACACGGTAAAATAAGTTGCGATAGAACGGAGACTTCTGCTAGATTATGCGGCAGACAGGAAAGCTTGTC
CAGGGGCACGGTTCGCCAGGCGGCCATGGCATCCTTTCCTGCATGCTTGGTCATGTACTTGTTGCAAGCAATACGGGCAGCCTCAAGAGCCTCACTGGAC
ACATTCTCCTTCTCCCATGAGACAAGGTGAACACAGTGAGAGAACTCATCGACACCCTTCTTCTTCATGCCAACATCATAGATCCTGATCTTAGGGTCAG
GCACACCACGGCAGTACCTTGACTTGGGGTACGGCTTGTTCTTGATCTGCCGAT