Detailed information on CNT30676624


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0ITS8|RL101_ORYSJ, E-value = 6e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30219795Setaria viridisHordeum vulgare76.4987.991.28218forward
CNT30364215Setaria viridisSorghum bicolor83.8671.7791.21239forward

Expression of CNT30676624

Peptides detected in this lncRNA

>peptide 1 (48 aa)
HRTERRTWPMSTLAQVPWGLPKAPLIPVWSLSAPAHESILLMRSTWNG*

>peptide 2 (94 aa)
APHRKEDLANVHPSTGTLGLAKGTPHSSLEPISPSTRKHLVDAEHMERVNTVGELINSLPLHSNIIDPDLGIRYTTAIPGLGIRLVLDLAIAPRR

Sequence

>CNT30676624
GCACCGCACAGAAAGGAGGACCTGGCCAATGTCCACCCTAGCACAGGTACCCTGGGGCTTGCCAAAGGCACCCCTCATTCCAGTCTGGAGCCTATCAGCC
CCAGCACACGAAAGCATCTTGTTGATGCGGAGCACATGGAACGGGTGAACACAGTAGGGGAACTCATCAACTCCCTTCCTCTTCATTCCAACATCATAGA
TCCTGATCTTGGGATCAGGTACACCACGGCAATACCTGGACTTGGGATACGGCTTGTTCTTGATCTGGCGATAGCACCTCGCAGG