Detailed information on CNT30363319


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1ACG9|RK12_CHAVU, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674900Sorghum bicolorSetaria viridis15.3131.491.3681forward
CNT30523072Sorghum bicolorSetaria italica19.2840.3295.1102forward
CNT30293417Sorghum bicolorTriticum aestivum33.0835.4387.43175forward
CNT30323277Sorghum bicolorAsparagus officinalis10.5922.7687.556forward
CNT3099756Sorghum bicolorOryza rufipogon29.1128.9590.26154forward
CNT30115484Sorghum bicolorOryza nivara29.1129.2890.26154forward

Expression of CNT30363319

Peptides detected in this lncRNA

>peptide 1 (31 aa)
QQFLMNDNGWGYKRFGMQRKEIEEKKESYYT*

Sequence

>CNT30363319
AACAGCAATTCCTTATGAACGACAATGGGTGGGGATACAAAAGATTTGGGATGCAAAGAAAAGAAATTGAAGAAAAAAAGGAGTCCTATTATACCTAGTG
TCACACGATAGATATCTTGGCGCCGACCTCCTCGAGCTGTTTCTTGGCGTCCTCGGCCTCGTCCTTGCTGACGGCCTCCTTAAGCTTCTTGGGGAGGCCC
TCGATAAGGTCCTTGGCCTCCTTGAGCGCCAGGCTGGTGAGCGCGCGCACCACCTTGATAGTGGCGATACGCGCGCTGCTGGGAACCTCCTCAATTACTA
CGTCGAACTCCGTCTTCTCGACGGGGGCCTCCTCCTCGGCGGCCCCCGCGCCGGCAGTGGGGCACGGCGAGGGAGGACCTCGGGAGCGAGGCGGTGGGGG
AAGGGGAGGTGGAGGGGCGAGAGAGGAGGGTGAAGGCGGAGGAGAGGGTGGTGGACGCCATGGATTGCTCTTGGGAATGGGAGCTTCGTGCGTCGGGAGT
GAGCAGCAGCGGCAGGAGGAGGCGGGGGA