Detailed information on CNT30115484


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674900Oryza nivaraSetaria viridis13.1226.7494.269forward
CNT30523072Oryza nivaraSetaria italica19.3940.3294.12102forward
CNT30293417Oryza nivaraTriticum aestivum27.7629.5589.04146forward
CNT30363319Oryza nivaraSorghum bicolor29.2829.1190.26154forward
CNT3099756Oryza nivaraOryza rufipogon98.196.99100516forward

Expression of CNT30115484

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MDTLAPTSSSCFLASSASSLLTPSLTFLGRPSMRSLASLRARLESAVEAMGMGGVSSRFRS*

Sequence

>CNT30115484
TTAAGGGTGATTGACCTGACAGTAGCTTTTCTCTACTGCCATGATTAACAATTTAACAGACAGCATAATTTCACTTCAACACTACACCGCCATTGCACAA
TTCTCACCATTATGATTGCGCCAATATACAAAATCTACATTGGCAATTTAGCGCGTGGAACATCGATATCAATACAAGATGGAATGTGAACTAACAGATC
CACATACAGAAATCTCATAGTATGAAACAACAAACCATTGTAAATATCAAAGGTGGTACACAAGATTAGGGTGAGAAAAAAAGGGGAGTCCTAAAATTAC
CTAGTGTCACGCAATGGACACCTTGGCGCCGACCTCCTCGAGCTGCTTCTTGGCATCCTCGGCCTCGTCCTTGCTGACACCCTCCTTGACCTTCTTGGGG
AGGCCCTCGATGAGGTCCTTGGCCTCCTTGAGGGCCAGGTTGGAGAGCGCGGTGGAAGCCATGGGGATGGGGGGAGTGAGCTCTCGCTTCCGGAGTTGAG
GTGAGCTGCGGGAGGAGGAAGCGAGG