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Detailed information on CNT30293417


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674900Triticum aestivumSetaria viridis14.5727.9188.8972forward
CNT30523072Triticum aestivumSetaria italica20.6540.3290.2102forward
CNT30222969Triticum aestivumHordeum vulgare13.5623.8410067forward
CNT30363319Triticum aestivumSorghum bicolor37.4534.9787.57185forward
CNT3099756Triticum aestivumOryza rufipogon29.5527.4489.04146forward
CNT30115484Triticum aestivumOryza nivara29.5527.7689.04146forward

Expression of CNT30293417

Peptides detected in this lncRNA

>peptide 1 (39 aa)
TVSYPKPIVPIRNLNNATSGKYTRLDTTHEHELIIPHAH*

>peptide 2 (87 aa)
METLAPTPSSCFLASSASSLLTASLSFFGRPSIRSLASFSARLVSARTTLMVASLLKGEPGNGVAELKDLRGLSGGGGDGDGAAAAVG

Sequence

>CNT30293417
ACAGTATCATATCCAAAACCAATAGTACCCATTAGGAATCTAAATAATGCAACATCCGGTAAGTATACAAGATTGGATACAACACACGAACATGAACTAA
TAATTCCACACGCGCACTAATCTCATATGAAACAAAATCCACGGCAATTACAAGAGGAATACAAAAGATTGATATGAAACATAAAATGTAATGGGAGAAA
AAGGAGCCTAGTATACCTAGTCTCACGCTATGGAAACCTTGGCGCCGACTCCCTCGAGCTGCTTCTTGGCCTCCTCGGCCTCGTCCTTGCTCACTGCCTC
CTTGAGCTTCTTTGGGAGACCCTCGATAAGATCCTTGGCCTCCTTTAGCGCCAGGTTGGTCAGTGCGCGCACAACCTTGATGGTTGCGAGCCTCCTCAAG
GGTGAGCCCGGCAATGGCGTCGCCGAGCTCAAGGACCTTCGGGGACTCAGTGGCGGTGGAGGCGACGGCGACGGCGCGGCGGCGGCGGTTGGCG