Detailed information on CNT30523072


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293417Setaria italicaTriticum aestivum37.9419.4390.6296forward
CNT30363319Setaria italicaSorghum bicolor37.9418.1594.7996forward
CNT30323277Setaria italicaAsparagus officinalis20.1620.7388.2451forward
CNT3099756Setaria italicaOryza rufipogon37.9418.0593.7596forward
CNT30115484Setaria italicaOryza nivara37.9418.2593.7596forward

Expression of CNT30523072

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MDTLAPTSSSCFLASSASSLLTASLSFLGSEAEGDGEEEGRERRVKAEERVVDAMGTCSGSSGLGSEQRRREEAGDKKMR

>peptide 2 (70 aa)
LVSHDGHLGADLLELLLGVLGLVLADGLLELLGERGGGGRGGGGAGEEGEGGGEGGGRHGDLLGELGPRE*

Sequence

>CNT30523072
CTAGTGTCACACGATGGACACCTTGGCGCCGACCTCCTCGAGCTGCTTCTTGGCGTCCTCGGCCTCGTCCTTGCTGACGGCCTCCTTGAGCTTCTTGGGG
AGCGAGGCGGAGGGGGACGGGGAGGAGGAGGGGCGGGAGAGGAGGGTGAAGGCGGAGGAGAGGGTGGTGGACGCCATGGGGACTTGCTCGGGGAGCTCGG
GCCTCGGGAGTGAGCAGCGGCGGCGGGAGGAGGCGGGGGATAAGAAGATGAGG