Detailed information on CNT30358120


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727261Lactuca sativaCorchorus capsularis18.1133.7582.45188forward
CNT30628730Lactuca sativaVigna unguiculata10.7925.1185.71112forward
CNT30147201Lactuca sativaMedicago truncatula15.5133.6883.85161forward
CNT30627409Lactuca sativaDaucus carota16.0926.5981.44167forward
CNT30644098Lactuca sativaCannabis sativa5.9722.1487.162forward
CNT3022241Lactuca sativaPopulus trichocarpa20.6221.9981.78214forward

Expression of CNT30358120

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGRQVTFIRIQVHTIKIKTIVSCSVKKVKIRKIVTPLYHLKRIIIIVVQH*

>peptide 2 (59 aa)
MSPARPPPISGPKDLAGFIDPPENAPAAKMLAPTMNPMAMGAIVPNEPFFGSQAVAYTV*

>peptide 3 (31 aa)
PTNFTSSFNIKHKSFNHNTHIINEIKKNQIQ*

>peptide 4 (44 aa)
MVMNSNSFMTNKSVELHFSESYGQTSNVYSYTSTYHKNKNYSVL*

>peptide 5 (73 aa)
MMIKASEIVLFKNIGCILILLFMIIFIYIYSPKTMEIIFYGSMRYFHRLILKFLAYQSSGDETEKVACGDGAN*

Sequence

>CNT30358120
TTCCTACCAACTTCACCTCATCTTTCAATATCAAACATAAAAGCTTCAATCACAATACACACATAATTAATGAAATAAAAAAGAACCAAATTCAATGAAC
TCCTCATAAATAAAATAAGATAAAAAGAAAGAAAAACAAATAAATTGTTTTCCTTCCTTTTATTACAATCACAAATAAAAATGATTCACAAGAAATTTAA
AACTCGCTTGAAAGGGGGGCATGGTCGTGATTCATGAACACGTTAGGGTAAATGAGTCCCGCTAGGCCACCTCCGATAAGTGGTCCAAAAGATCTGGCAG
GGTTCATTGATCCACCAGAGAATGCACCGGCTGCCAAAATGTTGGCACCCACAATGAATCCAATGGCCATGGGTGCAATTGTTCCCAATGAGCCCTTCTT
TGGATCACAGGCAGTGGCGTATACTGTGTAAACCAACGCAAATGTGATAACGATCTCCATCACAACTCCTTGAATCGCTCCAACTCCGGCAGCAACACCA
TGTATAGGCACTGCCTGAAAAAATACAAGGTATATAGAATAAGTACATATCCAAGATGTACAAAACCACATGGTTATGAATTCTAACTCATTTATGACAA
ACAAGTCTGTTGAGTTGCATTTTTCAGAAAGTTATGGGCAGACAAGTAACGTTTATTCGTATACAAGTACATACCATAAAAATAAAAACTATAGTGTCTT
GTAGTGTTAAAAAAGTAAAAATCAGAAAAATTGTGACCCCACTTTATCATCTTAAAAGAATAATAATAATAGTGGTACAACACTAAGTCGGTAACACTAA
AACATAGCCTAAAATGATGATTAAAGCCTCCGAAATCGTTTTGTTTAAAAACATTGGTTGTATTTTAATATTATTGTTCATGATTATATTTATATACATA
TATTCACCAAAAACGATGGAAATTATTTTTTATGGGTCAATGAGATATTTTCATCGGTTAATTTTAAAGTTTCTTGCTTACCAGTCCTCCGGTGACGAAA
CTGAGAAGGTAGCATGCGGCGACGGAGCCAACTAGTTG