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Detailed information on CNT30628730


BLAST search results

BLAST vs Swiss-Prot:
sp|P24422|TIP2_TOBAC, E-value = 3e-56

BLAST vs NONCODE:
NONVVIT002931, E-value = 9e-14

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376051Vigna unguiculataArabidopsis thaliana32.7417.9480.82146forward
CNT30727261Vigna unguiculataCorchorus capsularis39.2431.4285.14175forward
CNT30486882Vigna unguiculataOlea europaea40.1316.286.03179forward
CNT30552658Vigna unguiculataOryza glaberrima50.933.7379.74227forward
CNT30627409Vigna unguiculataDaucus carota28.0319.987.2125forward
CNT30364799Vigna unguiculataSorghum bicolor39.4623.1378.98176forward
CNT30358120Vigna unguiculataLactuca sativa25.1110.7985.71112forward
CNT30644098Vigna unguiculataCannabis sativa30.4948.5782.35136forward
CNT3022241Vigna unguiculataPopulus trichocarpa49.3322.6183.64220forward

Expression of CNT30628730

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDPPLNGPAAKMLAPTMNPIAMGAMVPNEPFLGSAAVAYTV*

>peptide 2 (30 aa)
MGQPSRSSYQRSFHLRQLGRMSGLGSWTHH*

Sequence

>CNT30628730
TTCGATGAAAACTGAAAAATAACGGAAGTTCCAACAAGGCATGGTCGGAGTTGAATTTAAAATTTACAGAATTATTACAAGCGGCGAAAGGAAAATCGAA
GGTACAGTGTGAAATAGCAGAAGCGAAGATGATGAAGCCAGCCAAACCCCCTCCGATCAATGGGCCAACCCAGTAGATCCAGTTATCAGCGAAGTTTCCA
CTTACGACAGCTGGGCCGAATGAGCGGGCTGGGTTCATGGACCCACCACTGAATGGGCCCGCAGCTAAGATGTTGGCACCCACAATGAACCCAATAGCAA
TGGGTGCAATGGTGCCCAACGAGCCCTTTTTAGGGTCAGCTGCAGTTGCGTACACCGTGTAAACCAACGCAAAAGTGATAATAATCTCAAACACCACACC
TTGGAAAGCGTTCACACCATAAGCCAGTCCATGGGTTGGAATGCTC