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Detailed information on CNT30727261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Corchorus capsularisSetaria viridis21.919.3381.15122forward
CNT30521388Corchorus capsularisSetaria italica21.919.381.15122forward
CNT30376051Corchorus capsularisArabidopsis thaliana24.0616.4681.34134forward
CNT30628730Corchorus capsularisVigna unguiculata31.4239.2485.14175forward
CNT30486882Corchorus capsularisOlea europaea27.1113.6780.79151forward
CNT30589165Corchorus capsularisMusa acuminata34.4741.9280.21192forward
CNT30147201Corchorus capsularisMedicago truncatula27.2931.886.18152forward
CNT30443231Corchorus capsularisAegilops tauschii21.928.4481.15122forward
CNT30254829Corchorus capsularisAvena sativa27.1121.380.79151forward
CNT30358120Corchorus capsularisLactuca sativa33.7518.1182.45188forward
CNT30644098Corchorus capsularisCannabis sativa20.8341.4383.62116forward
CNT3022241Corchorus capsularisPopulus trichocarpa31.4217.9989.14175forward
CNT30101968Corchorus capsularisOryza rufipogon27.1119.8780.13151forward
CNT30724248Corchorus capsularisLupinus angustifolius12.5720.5988.5770forward

Expression of CNT30727261

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFRVHEHISIDKSSQRQPVRRSELGSWIHLRMDQQPRCWLQQ*

>peptide 2 (41 aa)
MDPPENGPAAKMLAPTMKPMAMGAMVPSEPFLGSAAVAYTV*

>peptide 3 (42 aa)
MVENNKKLYNNYNQIEKEKGARKKEEQKKQFLLLLQGPNPNF*

>peptide 4 (37 aa)
MRTNLLKGIKKKWLHIHQPHPFPQSNGRKQQEALQQL*

Sequence

>CNT30727261
TAAAACAAAAGCATATCTAAAATAAAGCACATCATGAGGACAAATTTGTTGAAGGGAATTAAAAAAAAGTGGCTGCACATTCACCAACCTCATCCATTTC
CACAAAGCAATGGTCGAAAACAACAAGAAGCTTTACAACAATTATAACCAAATAGAAAAAGAAAAAGGAGCTAGAAAGAAAGAAGAGCAAAAAAAGCAAT
TCCTTCTTTTATTACAAGGGCCAAATCCCAATTTTTGATTGAAAGAAAATCAGACAAATTAATTAAATTAGAAGTGATCACTGGATAATGGTGCATGTTC
AGAGTGCATGAACACATTTCCATAGATAAGTCCAGCCAGCGACAGCCGGTCCGAAGGAGCGAGCTGGGTTCATGGATCCACCTGAGAATGGACCAGCAGC
CAAGATGTTGGCTCCAACAATGAAACCAATGGCAATGGGTGCAATGGTGCCAAGTGAACCCTTCTTGGGGTCAGCTGCTGTTGCATACACAGTGTAAACC
AAAGCAAATGTGATGATGATTTCCATCACTACTCCTTGAACTGATCCAACTCCAGCT