« Back to Cannabis sativa search


Detailed information on CNT30644098


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Cannabis sativaSetaria viridis47.8621.2483.58134forward
CNT30519799Cannabis sativaSetaria italica37.517.4787.62105forward
CNT30376051Cannabis sativaArabidopsis thaliana52.1417.9484.25146forward
CNT30727261Cannabis sativaCorchorus capsularis41.4320.8383.62116forward
CNT30628730Cannabis sativaVigna unguiculata48.5730.4982.35136forward
CNT30397893Cannabis sativaTriticum turgidum52.523.0882.99147forward
CNT30589165Cannabis sativaMusa acuminata43.9326.8683.74123forward
CNT30552658Cannabis sativaOryza glaberrima51.0721.2582.52143forward
CNT30147201Cannabis sativaMedicago truncatula41.4324.2781.03116forward
CNT30443527Cannabis sativaAegilops tauschii52.526.8282.31147forward
CNT30254829Cannabis sativaAvena sativa52.520.7383.67147forward
CNT30612709Cannabis sativaArabis alpina4010.5382.14112forward
CNT30627409Cannabis sativaDaucus carota52.523.4185.03147forward
CNT30364799Cannabis sativaSorghum bicolor52.519.3284.35147forward
CNT30596416Cannabis sativaOryza meridionalis41.4325.5583.62116forward
CNT30358120Cannabis sativaLactuca sativa22.145.9787.162forward
CNT3022241Cannabis sativaPopulus trichocarpa40.3611.6184.07113forward
CNT30101968Cannabis sativaOryza rufipogon52.519.3482.31147forward
CNT30576681Cannabis sativaOryza barthii41.4319.9783.62116forward
CNT3063260Cannabis sativaSelaginella moellendorffii31.4323.4782.9588forward

Expression of CNT30644098

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VHGSTAEWACGKDVGTNNESNSDWGNGSE*

>peptide 2 (40 aa)
GFMDPPLNGPAARMLAPTMNPIAIGAMVPSEPFLGSAAVA*

Sequence

>CNT30644098
GGGTTCATGGATCCACCGCTGAATGGGCCTGCGGCAAGGATGTTGGCACCAACAATGAATCCAATAGCGATTGGGGCAATGGTTCCGAGTGAGCCCTTCT
TGGGGTCGGCAGCTGTGGCGTAAACGGTGTAGACCAGTGCGAAGGTGGCATTAAACTCAGCAAGATAGGCCTTGAGAGAAGTAGAGCTGAAACAGTCACC
AAAGCTACCCAAAGTCAATTTCACCATTTTTCTACAAAGGAAATTATAAAGAGATGATGAGTTGGCTCAGTTGCTCTTGA