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Detailed information on CNT30479936


BLAST search results

BLAST vs Swiss-Prot:
sp|P85190|FTSH_HELAN, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673684Arabidopsis halleriSetaria viridis9.0222.983.17101forward
CNT30373918Arabidopsis halleriArabidopsis thaliana1524.1481.55168forward
CNT30727216Arabidopsis halleriCorchorus capsularis12.0520.4985.93135forward
CNT30631252Arabidopsis halleriVigna unguiculata11.4347.4185.16128forward
CNT30563498Arabidopsis halleriActinidia chinensis24.2996.1182.72272forward
CNT3085131Arabidopsis halleriVigna radiata8.0431.5886.6790forward
CNT30543849Arabidopsis halleriBrassica napus11.2542.4283.33126forward
CNT30172715Arabidopsis halleriTrifolium pratense15.0922.9683.43169forward
CNT30144812Arabidopsis halleriMedicago truncatula43.8458.5285.95491forward
CNT3079806Arabidopsis halleriBrassica juncea14.9140.1492.22167forward
CNT30653851Arabidopsis halleriRosa chinensis19.4625.0387.61218forward
CNT30689755Arabidopsis halleriTriticum urartu10.8940.5387.7122forward
CNT30349562Arabidopsis halleriEragrostis tef10.6229.3184.87119forward
CNT30102190Arabidopsis halleriOryza rufipogon10.8931.6182.79122forward
CNT30576794Arabidopsis halleriOryza barthii10.8920.6482.79122forward
CNT30175903Arabidopsis halleriVigna angularis9.9124.5688.29111forward

Expression of CNT30479936

Peptides detected in this lncRNA

>peptide 1 (59 aa)
SETTAFFFSGPAMILSRASDISSLLISLSSRLAARIAASFIRFCKSAPVKPGVLLATFS*

>peptide 2 (29 aa)
MGLKMWSPLKLSEESKLDFEEESGEKGRIF

Sequence

>CNT30479936
CCTCTGAGACAACAGCGTTCTTCTTCTCCGGTCCAGCAATGATCCTCTCAAGAGCATCGGATATTTCATCCTTGCTTATCTCCTTAAGCTCACGTCTAGC
CGCAAGAATCGCAGCTTCATTCATCAGGTTCTGTAAATCAGCACCAGTGAAACCCGGAGTTCTCCTCGCAACTTTCTCATAATCCACTGTGACTTGCCGG
TCAAATCTACCAGGTCTCAGCAATGCGGAGTCAAGAACATCCGGTCTATTGGTTGCAGCCAACACAATGACACCAGAATTACCAGAAAACCCATCCATCT
CAGTCAAAAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACCACCCATCCCAGCTCCTCTTTGCCTACCCACAGCATCAATCTCATCAATAAACAC
AATACAAGGAGCTTTCGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCACCCACACCAACAAAAAGCTCCACAAACTCCGAAGCAGCACACGAA
AAGAACGGCACTCCTGCTTCTCCAGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGTGGACCAACCAACAAACACCCTTTAGGAATCTTAGCAC
CTAAAGCAGTATACTTATCAGGATTCTTCAAGAAATCAACAACTTCTTGTAACTCAAGCTTAGCTTGATCAGCTCCAGCAACATCACCAAACGTCACCCC
AGTTTCCGGAAGATCCGATGATTGAGCTTGTGGATTCGGTGCTGTCATCAAAACGTTCTGACCAAACGTCGACAGATTTGGTGACTGAGCTTCAACAGTA
ATGGTCGGAGCTGGTGGCTGAACTGGTTCGTTAACCGCTAAAGCTTGTGGAGACGAAGATGAGAACAACAGAGCCGCTAACGCAGCTTGTGATGGCAAAG
ATTTCATTAGCTTCTCCGATTGGTATCTTCTTCGAGAGATGACTGAGAAAGGAAGAGACTTTGTGGTGGTTTTTGGTGTTGGAGCTGAGATTATGATTTG
AGAACCGAGGAAATTTGAAGAAAGTAGTAATGGGTTTGAAGATGTGGTCGCCATTGAAGCTCTCTGAAGAATCAAAATTAGATTTTGAAGAAGAAAGTGG
TGAAAAAGGAAGGATCTTTG