Detailed information on CNT30348261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315899Eragrostis tefCorylus avellana20.3424.2894.9259forward
CNT30516940Eragrostis tefJuglans regia34.144.0289.999forward
CNT30168613Eragrostis tefPistacia vera33.119.6383.3396forward
CNT30562313Eragrostis tefActinidia chinensis34.1416.0288.8999forward
CNT30687535Eragrostis tefTriticum urartu21.0319.4393.4461forward
CNT30570407Eragrostis tefVitis vinifera27.592.278580forward
CNT30102338Eragrostis tefOryza rufipogon35.1716.0695.1102forward
CNT30583583Eragrostis tefEchinochloa crusgalli33.7912.0496.9498forward

Expression of CNT30348261

Peptides detected in this lncRNA

>peptide 1 (95 aa)
VPPSPALPPPRFVVAASIFAAISFAVCFFGFAFPVISDPVLSPVNSLAVPLAAAAAAAFLTLLVFLFVALQWAKGSDRGRQLLGSRGRTRLLPAAG

>peptide 2 (95 aa)
RTPQPRLAAAAVRRRRVDLRRDLLRCVLLRLRLPRHLRPGSLSGKLSRGPARRRRRRRLPNPTCVLVRRAPMGEGVGPGTPIIRLPRTHTAPPRGG

>peptide 3 (43 aa)
YPPAPPCRRRGSSSPRRSSPRSPSLCASSASPSPSSPTRFSLR*

Sequence

>CNT30348261
CGTACCCCCCAGCCCCGCCTTGCCGCCGCCGCGGTTCGTCGTCGCCGCGTCGATCTTCGCCGCGATCTCCTTCGCTGTGTGCTTCTTCGGCTTCGCCTTC
CCCGTCATCTCCGACCCGGTTCTCTCTCCGGTAAACTCTCTCGCGGTCCCGCTCGCCGCCGCCGCCGCCGCCGCCTTCCTAACCCTACTTGTGTTCTTGT
TCGTCGCGCTCCAATGGGCGAAGGGGTCGGACCGGGGACGCCAATTATTAGGCTCCCGCGGACGCACACGGCTCCTCCCCGCGGCGGGAG