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Detailed information on CNT30102338


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M8S0|MBS1_ARATH, E-value = 2e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315899Oryza rufipogonCorylus avellana9.2924.2893.2259forward
CNT30516940Oryza rufipogonJuglans regia31.658.1684.58201forward
CNT30562313Oryza rufipogonActinidia chinensis31.8132.6985.64202forward
CNT30348261Oryza rufipogonEragrostis tef16.0635.1795.1102forward
CNT30570407Oryza rufipogonVitis vinifera29.615.3482.45188forward

Expression of CNT30102338

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MDLMSGAVVLQRGHSSLAWPPLSCPSRSFCPAFPPPLFVVAASIFAAISFAVCFFGFAFPVISAPPP

>peptide 2 (45 aa)
MYMCANQRIYHTAHHDTVVIIQNSKQQQVSTPERAAAGGSSSRFG*

Sequence

>CNT30102338
TCCAATTCATCCTTGCTACGAAACGGAAGTGAGTGAGCAAACGGATTTAGCCATCACCTTTTTCTTTACTCAGATTTAGCAATTGTTTGAGCAGTGACAG
ACATAAACATTATCATCCATTGACACCATTGACAGCATCATAGAGTAGTGACACATAAACTAAACATCATAGCTAAAACATGCCGACGAAGACGCGACGG
AACACGGTCACATATGTATATGTGCGCGAATCAACGCATCTATCACACGGCACATCATGACACAGTAGTAATAATTCAAAACAGCAAGCAGCAGCAAGTA
AGCACACCGGAGCGAGCGGCGGCGGGCGGTAGTAGTAGCAGATTCGGGTGATGATGGATTCGATTGCGGTTACTTCTTGAGCTTGTCGGGCTCGAAGGGG
AGCTTGGGGTGGCGCGCCTCGTGGTGGATCTGCATGGACTTGATGTCGGGGGCGGTGGTCTTGCAGAGAGGGCACTCGAGCTTGGCGTGGCCGCCCTTGT
CCTGCCCCAGCCGGTCCTTCTGCCCGGCCTTCCCGCCGCCCCTGTTCGTCGTCGCCGCGTCGATCTTCGCCGCGATCTCCTTCGCCGTGTGCTTCTTCGG
CTTCGCCTTCCCCGTCATCTCCGCGCCCCCCCCCC